Pseudomonas sp. StFLB209: PSCI_3361
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Entry
PSCI_3361 CDS
T03623
Name
(GenBank) RNA polymerase sigma factor, FecI family
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pses
Pseudomonas sp. StFLB209
Pathway
pses02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pses00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PSCI_3361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pses03021
]
PSCI_3361
Transcription machinery [BR:
pses03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PSCI_3361
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_24
HTH_23
GerE
Sigma70_ECF
HTH_40
HTH_20
HTH_11
HTH_29
HTH_10
HTH_36
HTH_38
HTH_Tnp_4
HTH_28
Motif
Other DBs
NCBI-ProteinID:
BAP44063
LinkDB
All DBs
Position
3781973..3782491
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AA seq
172 aa
AA seq
DB search
MSADPPSLNAAVQHLYTEHHSWLQGWLRMRLGSRSDAADLAQDTFVRLLKARTALQIREP
RHYLSTVARGLVIDLFRRRALEQSYLQWLASVPESEQPSLEDQAVIIETLGEIDRMLDGL
GSTVKQTFLLSQCEGLTYAAIAERLGISLRTVNNHMAKAMEHCCLMQMQHFS
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgacccgccatccctcaacgctgctgtccagcacctgtataccgagcatcac
tcttggttacagggctggctacgcatgcgcctgggtagccgcagcgatgcggcagacctc
gcccaggacaccttcgtgcggctgctcaaagcccgcaccgcattgcagatccgcgaaccc
cggcattacctgtccaccgtcgcccgtggtctggtcatcgacctgtttcgccgccgcgcc
ctggaacaaagctacttgcaatggctggccagcgtgccggaaagcgaacagccgtcgctg
gaagaccaggcggtgattatcgagaccctgggcgaaatcgaccgcatgctcgatggcctg
ggcagcacggtcaagcaaacgttcctgctgtcgcagtgcgaaggcctgacctacgccgcc
attgccgagcgccttggcatttcgctacgcactgtcaacaaccacatggccaaagccatg
gagcattgctgcctgatgcagatgcagcatttttcatga
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