Pseudomonas sp. TCU-HL1: THL1_1726
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Entry
THL1_1726 CDS
T05373
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pset
Pseudomonas sp. TCU-HL1
Brite
KEGG Orthology (KO) [BR:
pset00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pset03021
]
THL1_1726
Transcription machinery [BR:
pset03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
THL1_1726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AOE84274
UniProt:
A0A1B3E403
LinkDB
All DBs
Position
complement(1845921..1848770)
Genome browser
AA seq
949 aa
AA seq
DB search
MAQQYEPGQRWISDSEAELGLGTILATDGRLLTVLYPATGETRQYALRNAPLTRVRFAPG
DEITHFDGWKLNVQEVEDIDGLLVYHGITAQNEPRTLPETQLNNFIQFRLASDRLFAGQI
DPLNWFALRYHSLEHNSRQLQSPLWGLSGARAQPIAHQLHIAREVADRVAPRVLLADEVG
LGKTIEAGLVIHRQLISGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDAERFAESDA
SNPFEDTQLALVSLEWLKESERAQDAAFAAGWDLLVVDEAHHLVWHPEQASPEYRLVEQL
AEIIPGVLLLTATPEQLGLESHFARLRLLDPSRFHDLDAFRAESANYRPVAEAVQELLDQ
GRLSDKAEATIKGFLGEEGEGLLQALAAGDTEAAPRLVRELLDRHGTGRVLFRNTRAAVQ
GFPERQLHPYPLPNPSEYMELPIGEHPDLYPEVSFQSQQDSSDDSERWWRFDPRVEWLID
TLKMLKRFKVLVICAHAETALDLEDALRVRSGIPATVFHEGMSILERDRAAAYFADEEFG
AQVLICSEIGSEGRNFQFAHHLVLFDLPAHPDLLEQRIGRLDRIGQKHTIQLHVPYLETS
PQERLFQWYHQALNAFLATCPTGSALQHQFGPRLLPLLDGGDDSQWQALVDEAEAERKRL
EGELHNGRDRLLELNSGGAGEGERLVEEILEQDDQFALPIYMESLFEAFGIDSEDHSENA
LVLKPGEKMLDAGFPLGDDEGVTVTYDRNQALSREDMQFLTWEHPMVQGGMDLVLSGSMG
NTAVALIKNKALKPGTVLLELLYVSEVVAPRSLQLGRFLPPKALRCLLDANGNDLAPKVG
FETLNDQLESVPRGSANKFVQAQRDVLAAQINAAEAKVAPRHVERVTEAQRRLKAELDEE
LARLTALQAVNPSVRDSELEAVRHQRDEGLVLLDKAALRLESIRVLVAG
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcagtatgaaccggggcaacgctggatcagtgacagcgaagcggaactgggg
ctcggaaccatcctggcaacggatggacgcctgcttacagtgctctacccggcgactggc
gaaacccgccagtatgcgctgcgcaacgcgcccctgacccgtgtgcgattcgcccctggc
gacgaaatcactcacttcgatggctggaagctcaacgtccaggaagtcgaagacatcgac
ggcctgctggtctaccacggcatcaccgctcagaacgagccccggaccctgccggaaacc
cagctgaacaacttcatccagttccgcctggccagcgaccgcctgttcgccggccagatc
gacccgctgaactggttcgccctgcgctatcacagcctggagcacaactcccgccagctg
cagtccccgctctggggcctctccggcgctcgcgcccagcccatcgcccaccaattgcac
attgcccgtgaagtggccgatcgcgttgcgccgcgcgtactgctggccgacgaagtgggg
ctgggcaagaccatcgaagcgggccttgtgatccatcgccagctgatttccggccgcgcc
agccgggtgctgatcctggtcccggaaaacctccagcaccagtggctggtggaaatgcgc
cgccgcttcaacctgcaagtggccctgttcgacgccgagcgctttgccgaaagcgatgcc
agcaaccccttcgaagacacccagttggccctggtttcgctggagtggctgaaagaaagc
gagcgtgcccaggacgcggcctttgccgctggctgggacctgctcgtggtcgacgaagcc
caccacctggtctggcacccggagcaggcgagccccgaataccgcctagtggagcaactg
gccgagatcatccccggggtgctgctgctgaccgcgaccccggaacaactgggcctggaa
agccacttcgcgcgcctgcgcctgctggacccgagccgcttccacgatctggacgccttc
cgcgccgaaagcgccaactaccgtccggtggccgaagccgtccaggaactgctggaccag
ggtcgcctgagcgacaaggctgaagccaccatcaagggcttcctgggcgaagaaggcgaa
ggcctgctccaggccctggccgctggcgacaccgaagccgcgccgcgactggtacgcgaa
ctgctggaccgccatggcaccggccgcgtgctgttccgcaacacccgcgccgccgtacag
ggcttccccgagcgccagctgcacccctacccgctgcccaacccgtccgagtacatggag
ctgcccatcggcgagcaccctgacctgtacccggaggtcagtttccagtcccagcaggac
agcagcgacgactccgagcgctggtggcgcttcgacccgcgcgtggaatggttgatcgac
accctgaagatgctcaagaggttcaaggtcctggtgatctgcgcccacgccgagaccgcc
ctggacctggaagatgccctgcgcgtgcgctccggcatccccgccaccgtgttccacgag
ggaatgagcatcctcgagcgcgaccgcgccgccgcttacttcgcggacgaggagttcggt
gcccaggtgctgatctgctctgaaatcggctccgaaggccgcaacttccagttcgcccac
cacctggtgctgttcgacctgccggcccacccggacctgctggagcagcgtatcggccgt
ctcgaccggatcggccagaagcacaccatccagctgcacgtgccttacctggaaaccagc
ccgcaggaacgcctgttccagtggtaccaccaggcactgaacgccttcctcgccacctgc
cccactggcagcgccctgcagcaccagttcggcccacgcctgctgcccctgctggacggt
ggcgacgacagccaatggcaagccctggtcgacgaagccgaagccgagcgcaagcgcctg
gaaggcgaactgcacaatggccgcgaccgtctgctggagctcaattccggcggtgccggc
gaaggcgagcgcctggtcgaggagatcctcgaacaggacgaccagttcgccctgcctatt
tatatggaaagcctgttcgaagccttcggtatcgacagcgaagaccactccgagaacgcc
ctggtgctcaagccgggggagaagatgctcgacgccggcttccccctgggcgatgacgag
ggcgtgacagtcacctacgaccgcaaccaggccctgtcccgcgaagacatgcagttcctc
acctgggaacaccccatggtgcagggcggcatggacctggtgctctccggctccatgggc
aacaccgccgtagccctgatcaagaacaaggcgctcaagcctggcaccgtgctgctggaa
ctgctctatgtcagcgaagtggttgccccgcgcagcttgcagctgggccgcttcctgccg
cccaaggccctgcgttgcctgctggacgccaacggcaacgacctggcgcccaaggtcggc
ttcgaaaccctgaacgatcaactggaaagcgtgccacgcggcagcgccaacaagttcgtc
caggcccagcgcgatgtcctcgccgcccagatcaacgccgctgaagccaaagtcgccccg
cgtcacgtcgagcgcgtgaccgaggcccagcgtcgcctgaaagccgagctggatgaagaa
ctggcgcgcctcaccgcgctccaggcggtcaaccccagcgtgcgcgacagtgaacttgaa
gccgtgcgccaccagcgcgacgaaggcctcgtactgctggacaaggccgccctgcgcctg
gagtcgatccgggttctggtggccggctga
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