Pseudomonas sp. TCU-HL1: THL1_2128
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Entry
THL1_2128 CDS
T05373
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pset
Pseudomonas sp. TCU-HL1
Brite
KEGG Orthology (KO) [BR:
pset00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pset03032
]
THL1_2128
03400 DNA repair and recombination proteins [BR:
pset03400
]
THL1_2128
Enzymes [BR:
pset01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
THL1_2128
DNA replication proteins [BR:
pset03032
]
Prokaryotic type
DNA Topoisomerases
THL1_2128
DNA repair and recombination proteins [BR:
pset03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
THL1_2128
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AOE84676
LinkDB
All DBs
Position
2306852..2309458
Genome browser
AA seq
868 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAKRGKAASEAP
ALSAKEKAKRQLVARMGVDPEHGWKAKYEILPGKEKVIDELRRLAKDADTIYLATDLDRE
GEAIAWHLRESIGGDDSRYKRVVFNEITKKAIQEAFSQPGDLDINRVNAQQARRFLDRVV
GYMVSPLLWQKIARGLSAGRVQSVAVKLVVEREREIRAFVPEEYWEVHADLGTAKNANVR
FEVIRENGEAFKPLNEAQAMAALEKLKASAYTVAKREDKPTSSRPSAPFITSTLQQAASN
RLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAIGMVRGFIEGEFGQKYLPAKPNVY
SSKEGAQEAHEAIRPSDVSLRPTQLSGMERDAERLYDLIWRQFVACQMPPAEYLSTNVSV
AASGFELRAKGRILKFDGYTRVLPQQSKPGEDDVLPEMNQGELLKLLKLEPSQHFTKPPA
RYSEASLVKELEKRGIGRPSTYAAIISTIQERGYVTVHNRRFYAEKMGDIVTERLNESFA
NLMDYGFTAGMEEHLDDVAQGDRDWKHLLDEFYGDFKMKLELAEGADKGMRANQPTLTDI
ACRECARPMMIRTASTGVFLGCSGYSLPPKERCKATINLVPGDEIAADDEGESESRVLRG
KHRCPICATAMDAYLLDETRKLHICGNNPDCSGYEIEQGQYRIKGYEGPSLECDKCGSEM
QLKTGRFGKFFGCTNASCKNTRKLLKSGEAAPPKIDPIRMPELKCEKVDDIYVLRDGASG
LFLAASQFPKNRETRAPLVQELIPHKDELDAKYHYLLDAPKKDPEGRPAVIRFSRKTKEQ
YVQTEVDGKPTGWRAFFDGGKWKVEDKR
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcatcgtggaatccccggccaaggccaagaccatcaacaagtac
ttgggtaaccagtacgtggtgaagtcgagcatcggccatatccgtgacctgcctaccagc
ggttcggccagtgccagcaaggagccggccaagcgcggcaaggccgcatccgaggctccg
gccctgtccgccaaggaaaaagccaagcgccagctggtcgcgcgcatgggtgtggacccc
gaacacggctggaaggccaagtacgagatcctgcctggcaaggaaaaggtgatcgacgaa
ctgcgtcgcctggccaaggatgccgacaccatctatctcgcaaccgacttggaccgcgaa
ggggaggccattgcctggcacctgcgggaatccatcggtggtgatgacagccgctacaag
cgtgtggtgttcaacgaaatcaccaagaaggccattcaggaagccttctcgcagcctggc
gatctggacatcaatcgcgtcaatgcccagcaggctcgtcgtttcctcgaccgggtcgtg
ggctacatggtctcgccgctgctctggcagaagatcgcccgcggcctgtctgccggccgt
gtgcagtcggtcgcggtaaagctggtcgttgagcgtgagcgtgagattcgcgccttcgtg
cccgaagagtactgggaagtgcatgccgatctcggcaccgcgaaaaacgccaacgtgcgc
ttcgaagtgattcgcgagaacggtgaggccttcaagccgctgaacgaagcccaggccatg
gcggccctggagaagctcaaggcgtcggcctatacggtagccaagcgcgaggacaagccg
acttccagtcgtccttccgcaccgttcatcacttccacgctgcagcaggccgcgagcaac
cgcctgggcttcggtgtgaagaaaaccatgatgatggcccagcgtctctacgaagcgggt
tacatcacctacatgcgtaccgactcgaccaacctttcggctgacgccattggtatggtg
cgcggcttcatcgagggcgagttcggtcagaaatacctcccggccaagccgaacgtctat
tccagcaaggaaggtgcccaggaggcgcacgaggcgatccgtccgtccgatgtcagcctg
cggccgacgcagttgtctggcatggaacgcgatgccgagcgcttgtacgacctgatctgg
cgccagttcgtcgcttgccagatgcccccggccgagtacctgtccaccaatgtcagtgtg
gctgcgagcggcttcgagctgcgtgccaagggccgcatcctcaagttcgacggttacacc
cgcgtattgccgcagcagagcaagccgggtgaagacgacgtgctgccggaaatgaaccag
ggtgagctgctcaagctgctgaaactcgagcccagccagcacttcaccaagccgcctgcg
cgttactccgaagccagcttggtcaaggagctggagaagcgcggtatcggtcgtccgtcc
acctatgcggcgatcatctccaccattcaggagcgtggctacgtgacggtgcacaaccgc
cgtttctacgccgagaagatgggcgacatcgttaccgagcgcttgaacgaaagcttcgcc
aacctgatggactacggctttaccgccggcatggaagagcatctggacgacgtggcccag
ggcgaccgcgactggaagcacctgctggacgagttctacggtgacttcaagatgaagctg
gagctggccgaaggcgctgacaagggtatgcgcgccaatcagccgaccctgaccgatatc
gcctgtcgtgagtgcgcccggccgatgatgatccgtaccgcgtccactggcgtcttcctc
gggtgctcgggctacagcctgccgccgaaggagcgttgcaaggcgaccatcaacctggtg
ccgggcgacgagatcgctgcggacgacgagggtgagtccgaatcccgcgtactgcgtggc
aagcatcgctgcccgatctgtgctaccgcgatggatgcgtacctgctggacgaaacccgc
aaactgcatatctgcggcaacaacccggattgctcgggctacgagatcgagcagggccag
taccgcatcaagggctatgaaggtccgagcctggagtgcgacaagtgcggcagcgagatg
cagctcaagactggccgtttcggcaagttctttggttgcaccaacgccagttgcaagaac
actcgcaagctgctgaaaagcggtgaggccgcgccgccgaagatcgatccgatccgcatg
cccgagctcaaatgcgaaaaggtcgacgacatctacgtgttgcgcgatggcgcttccggc
ttgttcctggcggccagccagttcccgaagaaccgcgagactcgtgcgccgttggtgcag
gagttgatcccgcacaaggatgaactggacgccaaatatcactacctgctcgatgcgccg
aagaaagaccccgaagggcgtccggcagtcatccgctttagtcgaaagaccaaggagcag
tacgtgcagaccgaagtcgatggcaagcccaccggctggcgcgcgttctttgatggcggc
aagtggaaggtcgaggacaagcgctga
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