Pseudomonas sp. TCU-HL1: THL1_219
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Entry
THL1_219 CDS
T05373
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pset
Pseudomonas sp. TCU-HL1
Pathway
pset03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pset00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
THL1_219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pset03400
]
THL1_219
Enzymes [BR:
pset01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
THL1_219
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
THL1_219
DNA repair and recombination proteins [BR:
pset03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
THL1_219
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DZR
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
AOE82767
UniProt:
A0A1B3DZQ3
LinkDB
All DBs
Position
240120..240932
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AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPFLEGQRVSRVIVRERRLRWPIPEDLDVRLSGQRILHVERRAKYL
LLGAEAGTLISHLGMSGSLRLVEADLAAAKHEHVDIELESGLALRYTDPRRFGALLWSDD
PLNHELLRHLGPEPLTDLFDGERLFQLSRGRSMAVKPFIMDNAVVVGVGNIYASEALFAA
GIDPRREAGSISRARYLALAMEIKRILAQAIECGGTTLRDFVGGDGKPGYFQQELFVYGR
GGEFCKHCGSTLREVRLGQRASVYCPRCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgcctgaagtcgaaaccacccgccgcggcatcgcgcccttcctcgaaggc
caacgcgtcagccgggtgatcgtgcgtgaacggcgcctgcgctggccaatccccgaggac
ctggatgtgcgcctgtccggccagcgcatcctgcatgtggagcgccgggccaagtacctg
ctgctgggggccgaggccggcaccctgatcagccacctcggcatgtccggtagcctgcgt
ctggtggaagctgacctggccgcggccaagcacgagcatgtggatatcgagctggagtcg
ggactggccctgcgctacaccgacccgcgccgcttcggcgcgctgctctggagcgatgac
ccgctgaatcacgagctgctgcgccacctgggcccggagccgctgaccgacctgttcgac
ggtgagcgcctgttccagttgtcccgtgggcgcagcatggcggtcaagccgttcatcatg
gataacgccgtggtggtgggcgtcggcaacatctacgccagcgaggcgctgttcgccgct
ggcatcgatccgcgccgcgaggcgggttcgatctcgcgggcgcgctacctggccctggcc
atggagatcaagcgcatcctcgcccaggccatcgaatgcggcggcaccaccctgcgcgac
ttcgtcggtggcgacggcaagccgggctacttccagcaggaactgttcgtctacggccgt
ggcggggagttctgcaagcactgcggctcgaccttgcgggaggtccgcctgggccagcgc
gccagcgtctattgtccgcgctgccagcgctga
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