Pseudomonas sp. TCU-HL1: THL1_2336
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Entry
THL1_2336 CDS
T05373
Name
(GenBank) RNA polymerase ECF-type sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pset
Pseudomonas sp. TCU-HL1
Pathway
pset02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pset00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
THL1_2336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pset03021
]
THL1_2336
Transcription machinery [BR:
pset03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
THL1_2336
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Sigma70_ECF
Sigma70_r3
HTH_24
PhyR_sigma-like
Rv2175c_wHTH
HTH_5
HTH_17
HTH_29
Fe_dep_repress
Motif
Other DBs
NCBI-ProteinID:
AOE84884
LinkDB
All DBs
Position
complement(2523313..2523831)
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AA seq
172 aa
AA seq
DB search
MSAGDSANPHLVGLPYRDHRDWLYGWLRRTVQCPHRAEDVSQDTFLRLLTRTDLQPPREP
RALLATIARGLLVDQFRRNHLERAYLDELALAPQALHPGPEEQALILESLREIDRLLGQL
SSKARAAFLHGRLDGLGHAEIAERLDVSPPRVRQYLAQGMRQCYIALYGEPT
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggccggtgattccgcgaatccgcatctggtagggctgccttaccgagaccatcgc
gattggctgtacggctggctgcgcaggacggtgcaatgcccccaccgcgccgaggacgtc
agccaggacaccttcctgcgcctgctcacgcgcaccgacctgcagccgccccgcgaaccc
cgtgccctgctggccaccatcgctcgcggcctgctggtggatcagttccggcgcaatcac
ctggaacgcgcctacctggacgaactggccctggcccctcaggcgctgcatcccggcccg
gaagaacaggccctgatccttgaaagcctgcgggaaatcgaccgcctgctcggacagctc
tccagcaaggcgcgggcagccttcctccatggccgcctggacggcctcggccatgctgaa
atcgccgaacgcctggacgtctccccgccgcgcgttcgccagtacctggcgcaaggcatg
cgccagtgctacatcgccctctatggggagccgacatga
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