Pseudomonas sp. TCU-HL1: THL1_3782
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Entry
THL1_3782 CDS
T05373
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pset
Pseudomonas sp. TCU-HL1
Pathway
pset03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pset00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THL1_3782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pset03019
]
THL1_3782
03009 Ribosome biogenesis [BR:
pset03009
]
THL1_3782
Enzymes [BR:
pset01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
THL1_3782
Messenger RNA biogenesis [BR:
pset03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
THL1_3782
Ribosome biogenesis [BR:
pset03009
]
Prokaryotic type
rRNA processing factors
THL1_3782
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AOE86330
UniProt:
A0A1B3E9V7
LinkDB
All DBs
Position
4024122..4027151
Genome browser
AA seq
1009 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GAERHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPGDMGLIVRTAGLGRSSEELQW
DLDYLLQLWSAIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSVEAHEEALS
FIRQVMPQYQSKIKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSID
INSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
REALEADRARVQIGRISRFGLLEMSRQRLRPSLGETSGIVCPRCDGQGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRSRSRIVILPNDHLETPHF
EVQRLRDDSPEVQSSQSSYEMTPAEAEEIQPVSSTRTLVRQEAAVKTVSPERPAPAPVAP
LAPPAPTPEPSLFKGLVKSLVGLFAGKEEPKVEAEKPAADRQARSEERRNGRQQNRRRDG
REGREGREARREDERKPREERQPREAREGQESRRERPAREERQPREERQPREERQAREPR
EERQPREERQPREERQPREERQPREAREGQEGRRERGERAERPAREERQPREERQPREER
QPSAELAQAEVVDEELLNNEELLQDDDEGADGERPRRRSRGQRRRSNRRERQREANGEEV
VEGQEGAEQATPAEAAEIAAVAVTAVVASEVVTEVVSEAPAQVEAPVVEAAVAEVAQVEE
TAPVAEKAAEVKEAPAFETPAAVEEPQVAEVAPVIAVAEVPVAAPEEVAPVAPQAEEPAR
AAASTGRAANDPREVRRRQREAERLAKEADEAAAKAVAAVAAAEPVSAAVHAIAGVEEQV
VAAEQKVEEAVEPAVDAPAEQSEQVAVTTETEPQEEEKDEAKDETKPVV
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcagcccgaagagttgcgtgttgctctggtcgac
ggccaacgcctgtacgacctggacatcgaatcgggtgcacgcgagcagaagaaagccaac
atctacaagggccggatcactcgcatcgagcccagcctcgaagccgccttcgtcgacttc
ggtgccgagcgccacggcttcctgcccctgaaagaaatctcccgcgagtacttcaagaag
tcccctgaaggccgcatcaacatcaaggaagtgctcagcgaaggccaggaagtcatcgtc
caggtcgagaaagaagagcgcggcaacaagggcgcagccctgaccaccttcatcagcctt
gccggtcgttacctggtgctgatgccgaacaacccccgcgccggtggcatttcccgccgc
atcgaaggcgaagagcgcaacgaactgcgtgaagcgctgaacggcctcaacgccccgggg
gacatgggtctgatcgtccgtaccgctggcctgggtcgctccagcgaagagttgcaatgg
gacctggattacctgctgcaactctggagcgccatcaaggaagcttccggtgagcgcggc
gcccccttcctgatctatcaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacattggcgaagtactggtcgacagcgtcgaggcccacgaagaagccctgagc
ttcattcgccaggtgatgccgcagtaccagagcaagatcaagctgtatcaggacagcgtt
ccgctgttcaaccgcttccagatcgagagccagatcgaaaccgccttccagcgcgaagtg
aagctgccgtcaggcggctccatcgtcatcgacccgaccgaagccctggtgtccatcgac
atcaactcggctcgtgcgaccaagggcggcgacatcgaagaaaccgccctgcagaccaac
ctggaagcggctgaggaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgacaccggccaagaaccagcgcgccgtggaagagaaagtc
cgtgaagcactggaggccgaccgtgcccgcgtgcagatcggtcgcatctcccgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccttcgctgggcgagaccagcggcattgtc
tgcccgcgctgcgatggccagggcatcatccgcgacgtcgagtccctgtcgctggccatc
ctgcgcctgatcgaggaggaggccctcaaggaccgcactgccgaagttcgtgcccaggtg
ccgatcccggttgcagcgttcctgctcaacgagaagcgcaacagcatcaccaagatcgaa
ctgcgtagccgttcgcgcatcgtcatcctgccgaacgaccatctggaaaccccgcacttc
gaagtccagcgcctgcgcgacgacagcccggaagtgcagagcagccagtccagctacgaa
atgacccctgccgaagcggaagaaattcagccggtcagttccacccgcaccctggttcgc
caggaagctgcggtgaagactgtttcccctgagcgccccgctccggccccggttgccccc
ctggccccgcctgcgccgacgccggaacccagcctgttcaagggcctggtgaagtccctg
gtgggtttgttcgctggcaaggaagagccgaaagtcgaggccgagaagccggctgccgac
cgccaggcccgcagcgaagagcgccgtaatggtcgccagcagaatcgtcgtcgcgacggc
cgcgaaggtcgtgagggccgtgaagcgcgccgcgaagatgaacgcaaaccgcgtgaagag
cgccagcctcgcgaagcccgtgaaggccaggagagccgccgcgagcgtccggcccgtgaa
gaacgccagccgcgcgaagagcgtcagccccgcgaagagcgtcaagcccgcgagccgcgt
gaagagcgtcagcctcgtgaagaacgccagccacgtgaggagcgccagccgcgcgaagag
cgtcaaccgcgcgaagcccgcgaaggccaggaaggtcgtcgcgagcgcggtgaacgcgcc
gagcgcccggcccgcgaagagcgtcagccgcgtgaagagcgtcaaccccgcgaggagcgt
cagccgagcgctgaactggctcaggctgaggtcgtcgacgaagaactgctgaacaacgaa
gaactgctgcaggacgacgatgaaggtgccgacggtgagcgtccccgccgccgttcccgt
ggccagcgccgccgcagcaaccgccgcgagcgtcaacgcgaggccaatggcgaggaagtg
gtggaaggtcaggaaggcgccgaacaggctactcctgccgaggctgctgagatcgctgca
gtagccgtcactgctgtcgtggccagcgaggtcgtcaccgaagtcgtcagcgaagctccg
gcacaggtcgaagccccggtggttgaagcagctgttgccgaagtggctcaggtcgaagaa
accgcaccggttgccgagaaggccgccgaagtcaaggaagccccggctttcgaaaccccg
gccgcagtcgaagagcctcaggtcgctgaagtcgctccggtaatagcagtggcagaagtg
ccggttgcagctcccgaagaggtagcgccagtcgcgccgcaagctgaagagcccgcccgc
gcagccgccagcaccggccgtgccgccaacgacccgcgtgaagtgcgtcgtcgtcagcgc
gaagccgaacgcctggccaaggaagccgacgaggctgccgccaaagccgttgcggccgta
gccgctgccgaacccgtgtccgccgccgtacacgccattgccggcgtggaagagcaagtg
gtagcagcggagcagaaggtcgaagaagccgtcgaaccggctgtagatgccccggccgag
cagtccgagcaggtggctgtaacaaccgaaaccgagccccaggaagaagagaaggatgaa
gccaaggacgagaccaaaccggtcgtctga
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