Pseudomonas sp. TCU-HL1: THL1_4503
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Entry
THL1_4503 CDS
T05373
Name
(GenBank) 23S rRNA (uracil-5-)-methyltransferase RumA
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pset
Pseudomonas sp. TCU-HL1
Brite
KEGG Orthology (KO) [BR:
pset00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pset03009
]
THL1_4503
Enzymes [BR:
pset01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
THL1_4503
Ribosome biogenesis [BR:
pset03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
THL1_4503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
MTS
PCMT
Methyltransf_11
Cons_hypoth95
Methyltransf_23
RrnaAD
TRM5-TYW2_MTfase
Ubie_methyltran
Methyltr_RsmB-F
Methyltransf_15
UPF0020
TPMT
FtsJ
Methyltransf_4
DREV
CMAS
Motif
Other DBs
NCBI-ProteinID:
AOE87051
UniProt:
A0A1B3EBY0
LinkDB
All DBs
Position
complement(4865678..4867030)
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AA seq
450 aa
AA seq
DB search
MSRRNTGLRFQPSGGARTPQVPVGKKQRLTIERLAHDGRGIAFVDGRTWFVAGALPDEEV
EARVLAARSQVVEARTERVLSASPLRLVPPCPHAGHCGGCTLQHLPHGDQLALKQRTLVE
QLARFADLAPQTLAAPLVGTEFGYRRRARIAVRWDAKVRELEVGFRAASSQAIVGIKDCQ
VLVQPLQPLMRALPELLRGLEKPQAVGHVELFHGTASALLLRHTQPLSEADLQRLREFCA
AHQAQLWLHGEGEPCPDQPDARLGYRLERWNLELEYRPGDFVQVNEAVNEAMVAQALDWL
NPQPGERVLDLFCGLGNFALPLARQVREVVAVEGVEAMVERARGNATANGLENVHFFQAN
LSNPLADAAWARQGFDAVLLDPPRDGAFEAVRQMAATGARRVVYVSCNPATLARDSAELV
KQGYQLKKAGILDMFPQTAHVEAMALFEVG
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcgtaacacaggcctgcgtttccagcccagcggcggagcgcggaccccgcaa
gtccctgtgggcaagaagcagcgcctcaccatcgagcggctggctcacgacgggcgcggt
atcgccttcgtcgatggacgcacttggttcgtcgccggcgccctgccggacgaggaagtg
gaagcccgtgtgctcgccgctcgtagccaggtggtggaggcccgcactgagcgagtgctg
agcgccagtccgttgcgcctggttccaccctgcccccatgccggccactgcggcggctgc
acgctgcaacacctgccccatggcgaccaactcgccctcaagcagcgcaccctggtggag
caacttgcacgttttgccgacctggctccgcagacgctggcggccccacttgtggggacc
gaattcggctatcggcgccgtgcgcgcatcgccgtgcgctgggacgccaaggtccgcgag
ctggaagtcggattccgtgcggcgtccagccaggcgatcgtcgggatcaaggattgccag
gtactggtacagcccttgcaaccgctgatgcgtgcgttgcccgaactgctgcgtggcctc
gaaaagccacaagcggtggggcatgtcgagctgttccacggcaccgcttcggcgctgctg
ctgcgtcacacccagcccttgagcgaggccgacctgcaacgcctgcgtgaattctgcgcg
gcccaccaggcgcagctctggctgcatggcgagggtgagccctgcccggaccagcccgat
gcacgcctgggctatcgcctggagcgctggaacctggagcttgaatatcgccccggcgat
ttcgttcaggtgaacgaggcggtcaatgaagcgatggtggcgcaggcgctagactggttg
aacccgcagccgggcgaacgggtgctggatctgttttgtgggctcggcaactttgctctg
ccactggcgcgccaggtgcgtgaagtggtggcggtggagggggtcgaggccatggttgaa
cgggcgcgtggcaacgccaccgccaatggcctggagaatgtgcacttcttccaggccaac
ctgtcgaaccccctggccgatgctgcctgggcacgacagggtttcgatgccgtactgctc
gatccgccgcgcgacggtgcgttcgaagccgttcggcagatggctgcaaccggtgcgcga
agagtggtctatgtatcctgcaacccagcgaccctggcgcgtgacagcgccgaactggtc
aagcagggataccagctgaagaaggccgggattctcgacatgtttcctcaaacggcccat
gtcgaggccatggcgttattcgaggtgggctag
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