Pseudomonas sp. TCU-HL1: THL1_4735
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Entry
THL1_4735 CDS
T05373
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pset
Pseudomonas sp. TCU-HL1
Pathway
pset02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pset00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
THL1_4735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pset03021
]
THL1_4735
Transcription machinery [BR:
pset03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
THL1_4735
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_20
HTH_23
GerE
HTH_24
HTH_40
HTH_28
DUF2774
TnsD
HTH_7
Motif
Other DBs
NCBI-ProteinID:
AOE87283
LinkDB
All DBs
Position
5109915..5110472
Genome browser
AA seq
185 aa
AA seq
DB search
MRTINICFRVQLLNHAADALSPPPAESLQTLYNDHHGWLTGWLRRRLGCPQNAADLAQDT
FLRVLLAREKPVILEPRAFLTTVAKRVLANHYRRQDIERAYLEALAAQPEALAPSEEERA
IILETLVELDRLLDGLPPLAKKVFLLAQVDGMTYVEIASQLAISLSTVKRHMVKAAQRCY
FAESV
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaccattaacatttgtttccgagtccagctcttgaatcacgccgccgacgccctt
tcgcccccgccggccgaatccctgcagacgctctacaacgaccaccatggttggctgacg
ggctggctgcgccgtcgcctgggctgcccgcaaaacgccgccgatctcgcccaggacacc
ttcctgcgcgtgctactggcgcgggaaaagccagtgatcctcgaacctcgcgcctttctc
accacggtggccaagcgcgtgctggccaaccactaccgccgccaggacatcgagcgtgcc
tacctcgaagccttggccgcacagccggaagcactcgcgccaagcgaggaagagcgcgcc
atcatcctggaaaccctggtggagcttgaccgcctgctcgacggcctgccgccgctggcg
aagaaggtcttcctgctggcccaggtggatggcatgacctacgtcgaaatcgcctcccag
ctcgctatctccctctccaccgtcaagcgccacatggtcaaggccgcgcagcgctgctac
ttcgcggagagcgtctga
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