KEGG   Pseudomonas sp. TCU-HL1: THL1_4735
Entry
THL1_4735         CDS       T05373                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pset  Pseudomonas sp. TCU-HL1
Pathway
pset02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pset00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    THL1_4735
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pset03021]
    THL1_4735
Transcription machinery [BR:pset03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     THL1_4735
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF HTH_20 HTH_23 GerE HTH_24 HTH_40 HTH_28 DUF2774 TnsD HTH_7
Other DBs
NCBI-ProteinID: AOE87283
LinkDB
Position
5109915..5110472
AA seq 185 aa
MRTINICFRVQLLNHAADALSPPPAESLQTLYNDHHGWLTGWLRRRLGCPQNAADLAQDT
FLRVLLAREKPVILEPRAFLTTVAKRVLANHYRRQDIERAYLEALAAQPEALAPSEEERA
IILETLVELDRLLDGLPPLAKKVFLLAQVDGMTYVEIASQLAISLSTVKRHMVKAAQRCY
FAESV
NT seq 558 nt   +upstreamnt  +downstreamnt
atgcgaaccattaacatttgtttccgagtccagctcttgaatcacgccgccgacgccctt
tcgcccccgccggccgaatccctgcagacgctctacaacgaccaccatggttggctgacg
ggctggctgcgccgtcgcctgggctgcccgcaaaacgccgccgatctcgcccaggacacc
ttcctgcgcgtgctactggcgcgggaaaagccagtgatcctcgaacctcgcgcctttctc
accacggtggccaagcgcgtgctggccaaccactaccgccgccaggacatcgagcgtgcc
tacctcgaagccttggccgcacagccggaagcactcgcgccaagcgaggaagagcgcgcc
atcatcctggaaaccctggtggagcttgaccgcctgctcgacggcctgccgccgctggcg
aagaaggtcttcctgctggcccaggtggatggcatgacctacgtcgaaatcgcctcccag
ctcgctatctccctctccaccgtcaagcgccacatggtcaaggccgcgcagcgctgctac
ttcgcggagagcgtctga

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