Pseudomonas sp. TCU-HL1: THL1_503
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Entry
THL1_503 CDS
T05373
Name
(GenBank) DNA-directed RNA polymerase sigma-70 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
pset
Pseudomonas sp. TCU-HL1
Pathway
pset02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pset00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
THL1_503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pset03021
]
THL1_503
Transcription machinery [BR:
pset03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
THL1_503
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMEM120A-B
Motif
Other DBs
NCBI-ProteinID:
AOE83051
LinkDB
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Position
complement(559786..561639)
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AA seq
617 aa
AA seq
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MSGKAQQQSRLKELIARGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMSAIAHFPGTVDGILSEYQRVTSEGGRLSDVLSGYIDPDDGTLPAEEV
EPVVLKDDSAKAKDKDDEEDEESEGDDAEEEGDGGPDPEEALRRFTAVSDQLEKAKKAVK
KHGRDSKQAAEELLALAELFMPIKLVPKQFDVLVEKVRGALDRVRGQERAIMQLCVRDAR
MPRADFLRLFPGNEVDLGWADGLAKGKAKYAEAIGKLVDDIKRNQQKLVDLEQEVELTVN
EIKDVNRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR
EPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVAT
VESLKEATREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPSRSEHLRSFLDE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgcctcaaagaattgatcgcccgtggccgtgag
cagggttacctgacttacgcggaggtcaacgaccacctgccggaggatatttccgacccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagagt
gccccggatgcggatgccctgttgctggccgaagccgacaccgacgaagccgccgctgaa
gaggccgcagccgcccttgcggcagtggaaaccgacatcggccgcactaccgaccccgtg
cgcatgtacatgcgtgaaatgggcaccgtggaactgctgacccgcgaaggcgagattgaa
atcgccaaacgcatcgaggaaggcatccgcgaagtcatgagcgccatcgcccacttcccg
ggcactgtcgacggcattctctccgagtaccagcgcgtcaccagcgaaggtggccgcctg
tccgacgttctcagtggctacatcgacccggacgacggcaccctgccggccgaagaagtc
gagcctgttgtcctgaaggacgattccgccaaggccaaggacaaggacgacgaggaagac
gaagaaagcgaaggcgatgacgccgaggaagaaggcgacggcggtcctgacccggaagaa
gccctgcgccgcttcacggccgtttccgatcagctcgagaaggccaagaaagccgtcaag
aagcatggtcgcgacagcaagcaggccgctgaagagctgctggccctggccgagctgttc
atgccgatcaagctggtgccgaagcaattcgacgttctggtcgaaaaagtccgtggtgcc
ctggaccgcgtccgcggccaggaacgcgcgatcatgcagctctgcgtgcgtgacgcccgc
atgccgcgcgccgacttcctgcgcctgttcccgggcaacgaagtcgacctcggctgggcc
gatggcctggccaaaggcaaggccaagtacgccgaagccattggcaagctggtggacgac
atcaagcgcaaccagcagaagctggtggatctcgagcaggaagtcgaactgactgtcaac
gagatcaaggacgtcaaccgtcgcatgtccatcggtgaagccaaggctcgccgggcaaag
aaagagatggtcgaggccaacctgcgtctcgtgatctccatcgccaagaagtacaccaac
cgtggcctgcagttcctcgacctgatccaggaaggcaacatcggcctgatgaaggcggtg
gacaagttcgaataccgtcgcggctacaagttctcgacctacgccacctggtggattcgc
caggcgatcacccgctctatcgcggaccaggcgcgcaccatccgtattccggtgcacatg
atcgagaccatcaacaagctcaaccgcatctcccgccagatgctgcaggaaatgggccgc
gagcccacgccggaagagcttggcgagcgcatggagatgcctgaggacaagatccgcaag
gttctgaagatcgccaaagagccgatctccatggaaaccccgatcggcgacgacgaagac
tcccacctgggcgacttcatcgaggacagcaccatgcagtccccgatcgatgtggccacc
gtggaaagcctcaaggaagccacccgtgaagtcctggccggcctcactgcccgtgaagcc
aaggtcctgcgcatgcgcttcggcatcgacatgaataccgaccacaccctcgaggaagtc
ggcaagcagttcgatgtcacccgcgagcgtatccgccagatcgaagccaaggcgctgcgc
aagctgcgtcacccgtcgcgaagcgagcacctgcgctccttcctcgacgagtaa
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