Pseudomonas sp. TCU-HL1: THL1_5509
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Entry
THL1_5509 CDS
T05373
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pset
Pseudomonas sp. TCU-HL1
Pathway
pset03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pset00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THL1_5509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pset03021
]
THL1_5509
03019 Messenger RNA biogenesis [BR:
pset03019
]
THL1_5509
Transcription machinery [BR:
pset03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
THL1_5509
Messenger RNA biogenesis [BR:
pset03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
THL1_5509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
AOE88056
LinkDB
All DBs
Position
complement(5979572..5980831)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPIGELLEMSDAMGLENMARSRKQDIIFALLKKHAKSGEEISGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDSIN
YDRPENAKNKILFENLTPLFPNERLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTILATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NKSGTRREELLTADDELQRMWILRKLLHPMDEIAAIEFLLDKLKDTKTNDEFFLSMRRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgaccgaactcaagcaaaagccgattggcgaacttctggaaatgtccgacgcc
atgggcctggagaacatggcccgttcgcgcaagcaggacatcatcttcgccctgctgaag
aagcacgcgaagagcggcgaggagatctccggtgacggcgtgctggagattctccaggac
ggcttcggcttcctgcgctccgccgactcttcctacctggccggcccggacgacatctac
gtttcgcccagccagatccgtcgcttcaacctgcgtacaggcgacaccatagttggcaag
attcgtccgcccaaggaaggcgagcgttacttcgcgctgctcaaggtcgactccatcaac
tacgaccgtcccgagaacgccaagaacaagatcctgttcgagaacctcactccgctgttc
cccaacgagcgcctgaaaatggaagccggcaacggctccaccgaagacctcaccggccgc
gtgatcgatctctgtgcgccgatcggcaagggccagcgtggcctgatcgtcgccccgccg
aaagcgggcaagaccatcatgctgcagaacatcgcggccaacatcacccgtaacaacccc
gagtgccacctgatcgtcctgctgatcgacgagcgcccggaagaagtgaccgaaatgcag
cgtaccgtgcgcggcgaagtggtcgcttccaccttcgacgagccgccgacccgccacgtg
caggttgccgagatggtgatcgagaaggccaagcgcttggtcgagcacaagaaggacgtg
gtcatcctgctggactccatcacccgtctggcccgtgcctacaacaccgtgatcccgagc
tccggcaaggtactgaccggtggtgtcgacgcccatgccctggagaagcccaagcgtttc
ttcggcgctgcgcgcaacatcgaggaaggcggttcgctgaccatcctcgccactgcgctg
gtcgaaaccggctcgaagatggatgaagtcatctacgaagagttcaagggcaccggcaac
atggagctgccgctggaccgccgcatcgccgagaagcgtgtgttcccggccatcaacatc
aacaagtccggtacccgccgcgaagagttgctgactgccgacgacgagctgcagcgcatg
tggatcttgcgcaagctgctgcacccgatggacgagatcgcggccatcgagttcctgctc
gacaagctgaaagacaccaagaccaacgacgaattcttcctgtcgatgagacgcaagtaa
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