Pseudomonas sp. TCU-HL1: THL1_5626
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Entry
THL1_5626 CDS
T05373
Name
(GenBank) DNA-directed RNA polymerase subunit omega
KO
K03060
DNA-directed RNA polymerase subunit omega [EC:
2.7.7.6
]
Organism
pset
Pseudomonas sp. TCU-HL1
Pathway
pset03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pset00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THL1_5626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pset03021
]
THL1_5626
03400 DNA repair and recombination proteins [BR:
pset03400
]
THL1_5626
Enzymes [BR:
pset01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
THL1_5626
Transcription machinery [BR:
pset03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
THL1_5626
DNA repair and recombination proteins [BR:
pset03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
THL1_5626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb6
Motif
Other DBs
NCBI-ProteinID:
AOE88173
UniProt:
A0A1B3EF85
LinkDB
All DBs
Position
6110863..6111126
Genome browser
AA seq
87 aa
AA seq
DB search
MARVTVEDCLDNVDNRFELVMLATKRSRQLATGGKEPKVAWENDKPTVVALREIAAGLVD
YDVIAQEDIVEEEPLFAAFDDEANEAL
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcgttaccgttgaagactgcctggacaacgtcgataaccgcttcgagctggtc
atgctcgctaccaagcgttcccgtcagctggccaccggcggcaaggagccgaaggtagcc
tgggaaaacgacaagccgaccgtagtcgccctgcgcgagatcgctgccggcctggtcgac
tacgacgtcatcgcccaggaagacatcgttgaagaagagccgctgttcgccgcattcgat
gacgaggccaacgaggccctctga
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