Pseudomonas sp. TCU-HL1: THL1_5701
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Entry
THL1_5701 CDS
T05373
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pset
Pseudomonas sp. TCU-HL1
Pathway
pset03420
Nucleotide excision repair
pset03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pset00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
THL1_5701
03430 Mismatch repair
THL1_5701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pset03400
]
THL1_5701
Enzymes [BR:
pset01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
THL1_5701
DNA repair and recombination proteins [BR:
pset03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
THL1_5701
MMR (mismatch excision repair)
Other MMR factors
THL1_5701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_11
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOE88248
UniProt:
A0A1B3EFC3
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All DBs
Position
6191732..6193912
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AA seq
726 aa
AA seq
DB search
MRDDLSLLLNSLNDAQRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSIL
SVTFTNKAAAEMRQRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEAGLAENFQILDSDD
QQRLVKRVIRDLGLDEQRWPARQAQWFINGQKDEGIRPQHIQAGGDLFLGTMLKIYEAYE
AACARTGVIDFSELLLRALDLWRDRPSLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLAR
GGESLMVVGDDDQSIYGWRGARIENIQQFSSDFPDTEVIRLEQNYRSTAGILKAANALIA
NNQGRLGKELWTEGEEGEPIGLYAAFNEHDEARYVVESIERALKDGMARSEMAILYRSNA
QSRVLEEALLREKIPYRIYGGQRFFERAEIKNAMAYLRLLDGRGNDAALERVINVPPRGI
GEKTVESIREFARVNEVSMWEAIRLMLANKALPGRASSALAAFMELIENLAAKALDMPLH
LMTQTVIEQSGLVAYHKDEKGEKGQARVENLEELVSAARAFENEETEEDLTPLQAFLSHA
SLEAGETQADAFEDSVQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSMEDPTRLEEERRL
AYVGVTRAMQRLVLTYAETRRLYGSETYNKVSRFVREVPPQLIREVRLNNSISRPMGAGS
RHGSIFDGAAVPETPFSLGQRVQHTLFGEGTILNFEGAGAQARVQVKFEDEGSKWLMLAY
AKLQPL
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgacgatctctccctcctcctgaactccctcaacgacgctcaacgccaggccgta
gcggccccgctggggcgtcaactggtgcttgccggcgccggttccggcaaaacccgcgtg
ctggtgcaccgcatcgcctggctgatccaggtggagcaggcctcgccgcactcgatcctg
tcggtgaccttcaccaacaaggccgcggccgagatgcgccagcgcatcgagcaactgctg
ggcatcaacccggcaggcatgtgggtcggcaccttccacggcctggcgcaccgcctgctg
cgggcccactggcaggaagcaggccttgccgagaacttccagatcctcgacagcgacgac
cagcagcgcctggtcaagcgggtgatccgtgacctcggcctcgacgagcaacgctggccg
gcccgtcaggcccagtggttcatcaatgggcagaaggacgagggcattcgcccgcaacac
atccaggccggtggcgacctgttcctcggcaccatgctgaaaatctacgaagcctacgag
gccgcgtgcgcacgcaccggcgtgatcgacttctccgaactgctgctgcgcgccctcgac
ctctggcgcgaccgcccgagcctgctggagcactaccagcgccgcttccgccatgtgctg
gtggacgagttccaggacaccaacgccgtgcaatacgcctggctgcgcctgctcgccagg
ggcggcgaaagcctgatggtggtaggcgacgacgaccagtccatctacggctggcgcggt
gcgcggatcgagaacatccagcagttctccagcgacttccccgacaccgaggtgattcgc
ctggagcagaactaccgctctacagcaggcatcctcaaggccgccaacgccctcatcgcc
aacaaccaggggcgccttggcaaggaactctggaccgagggcgaagaaggcgagcccatt
ggcctgtacgccgccttcaacgaacacgacgaagcccgctacgtggtggaaagcatcgag
cgtgcgctgaaggacggcatggcccgcagcgagatggccatcctctaccgctccaacgcc
cagtcgcgggtgctggaagaggcgctgctgcgggagaagattccctaccgcatctatggc
ggccagcgcttcttcgagcgcgccgaaatcaagaacgccatggcctacctgcgcctgctc
gacggccgtggcaacgacgcggcgctggagcgggtgatcaacgtgccgccgcgcggcatc
ggcgagaaaaccgtggagagcatccgcgagttcgcccgcgtcaatgaagtttccatgtgg
gaagcgatccgcctgatgctcgccaacaaggccctgcccggccgcgcctccagcgccctg
gccgcgttcatggagctgatcgagaacctcgcggccaaggccctggacatgcccctgcac
ctgatgacccagaccgtcatcgagcagagcggcctggtggcctaccacaaggacgagaag
ggcgagaaaggccaggcccgggtggaaaacctggaagaactggtcagcgccgcccgcgcc
ttcgagaacgaagagaccgaggaagacctcacgccgctgcaagctttcctcagccacgcg
tcgctggaagccggggaaacccaggccgatgccttcgaggacagcgtgcagctgatgacc
ctgcacagcgccaagggcctggaattcccgctggtgttcctggtgggcatggaagaaggc
ctgttcccgcacaagatgagcatggaagacccgactcgcctggaggaggagcgtcgcctg
gcctatgtcggcgttacccgcgccatgcaacgcctggtgctgacctacgccgaaacccgc
cggctctacggcagcgagacctacaacaaggtctcgcgcttcgttcgcgaagtgccgccg
cagctgatccgcgaagtacgcctgaacaacagcatcagccgccccatgggtgccggcagc
cgccacggctcaatcttcgacggcgccgccgtgcccgaaacaccgttctccctaggccag
cgcgtccagcacacgctgttcggtgaaggcaccatcctcaacttcgaaggcgccggcgcc
caggcgcgggtgcaggtgaagttcgaggacgaaggcagcaagtggctgatgctggcctac
gccaagctgcagccgctctga
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