Pseudomonas sp. TCU-HL1: THL1_89
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Entry
THL1_89 CDS
T05373
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pset
Pseudomonas sp. TCU-HL1
Pathway
pset03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pset00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
THL1_89
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pset03400
]
THL1_89
Enzymes [BR:
pset01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
THL1_89
DNA repair and recombination proteins [BR:
pset03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
THL1_89
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AOE82638
LinkDB
All DBs
Position
89044..92289
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AA seq
1081 aa
AA seq
DB search
MLNLYHANDLESLGELACMLLAQPQQDPLAPARVVVPSQGMGRWLTLQLARKQGIAMQLD
IQLPARFVWDITRLVLGELPPQSAFNPVTLGWRLYDWLCEPDNLVRAPRLAQYMAGGDER
RRLTLATRIADVFDQYLLYRDDWLAAWERGELLDLGTDEEWQALLWRELTADGHPHRARL
LDDLLTGLHGAAPIGGLPERLVVFGVSSLPPHHMRVLEGLARHCEVILFALNPCRDAWGD
IRDIRELARLPEPAIDDWYLDVGHPLLASLGKQGRDFFDALFTLGGQEIGVYAEDEDLHD
SSLLRAVQNDILRLRTRRPEERMALRDEDRSLEVHLCHSPLREVEVLHDQLLARFKADPG
LTPDQVVVLTPDIERYAPYIEAVFAPREGVPRIPFSLADRSLRAELPLVEAFLALLELPQ
SRFAAEELLAWLEQPALAARAGIENDDLPLLRDWLRNAGVRWGRDGAHRARLGLPEEGAF
SWRQGLDRLLLGFAAPPQLAGDAPPLLGDSWPLDALEGARAQLLGRLAGFVQRLGALADD
MARPRPLAEWAETLQGLIDQLFDEREAGDTLLLLSQVCGALREQAEAAGITRPLELALVR
QHLVAALDQGSGASGFLTGAVTFCTMVPMRSLPFRQVCLLGLDDGAFPRRTPAAGFDLIA
RKPRRGDRARRLDDRYLLLETLQSARDGLYLSFVGRDPRDNAHLPPSVLVSELLETIDLT
ATAGEHKASERVLVAHPLQPFASTNFSGGQLAGFAAPWFRAARRLAETPQAAAAPFALPL
PEPDADWLTLEPSQLIQCFRHPARFLLEQRLGLRLAKAEEALASDEPFSLEGPALRGLRQ
LALDAVERGWSEEDERRIARAAGWLPVGEVGHALWGQLRGPVHAFAPRLLEARPEAVPQP
LLVDIELAGVRIHGWLDGVTPEGLFGWRLYRLGEWELAPFWLRHLLLNLSATPGIARDSR
LLSPDGDWQAGPLANARELLEPWLQAYRKALLSPLPLLTKASYGFAQAFRKPGRKEPIDA
ARSKARVAWEGIDFGPVGESQDPWYALAFRDREPLDERFEQLAETLLGPALDALAGDDDE
E
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgctcaacctctaccacgccaatgacctggaaagcctcggcgagctggcctgcatgctg
ctcgcgcaaccccaacaggacccgctggcgcccgcccgggtcgtggtgccgagccagggc
atggggcgttggctgaccctgcagctggcgcgcaagcaaggaatcgccatgcaactggat
atccaactgccggcgcgcttcgtctgggacattacccgcctcgtgctcggcgagctgccg
ccgcagtccgcgttcaatccggtcaccctcggctggcgtctctacgactggctctgcgag
cccgacaacctcgttcgcgcgccgcgcctggcgcagtacatggcgggtggcgacgagcgt
cgccggctgaccctggccacgcgcatcgccgacgtcttcgaccaatacctgctttaccgt
gatgactggctggctgcctgggagcgtggcgagctgctcgatctcggcactgacgaggaa
tggcaggcgctgctctggcgcgaactgactgccgatggccacccgcaccgcgcccgcttg
ctggacgacctgctgaccgggctgcacggcgcagcccccatcggcggattgcccgagcgc
ctggtggtgttcggcgtcagcagcctgccgccacaccacatgcgcgtgctggaaggcctg
gcgcgccattgcgaggtgattctcttcgccctcaacccgtgccgcgatgcctggggcgat
atccgtgatatccgcgagctggccaggttgccggagcccgctatcgatgactggtatctc
gacgtcggtcatccgctgctggccagcctcggcaagcaggggcgcgatttcttcgacgcc
ctcttcaccctcggcggccaggaaatcggcgtgtatgccgaggatgaggacctgcacgac
agcagcctgctgcgtgccgtgcagaacgacatcctgcgcctgcgcacccgccgtcccgag
gagcgcatggccctgcgtgacgaggaccgctccctggaagtgcacctctgccactcaccc
ctgcgcgaagtcgaggtgctgcacgaccagttgctggcgcgcttcaaggccgaccccggc
ctgacgcctgaccaggtggtggtgctgacccccgacatcgaacgttacgcgccctatatc
gaagccgtgttcgccccccgcgagggcgtgccgcgcatccccttcagcctggccgaccgc
agcctgcgcgccgaactgccgctggtggaagccttcctggcgctgctggagttgccgcag
agccgcttcgccgccgaggaactgctggcctggctggaacaaccagcgctggccgcccgt
gccggcatcgagaacgacgacttgcccctactgcgcgactggctgcgcaatgccggcgtg
cgctggggccgcgatggcgcccatcgtgcacgcctgggcctgccggaggaaggcgccttc
agttggcgccaggggctcgaccgcctgttgttgggcttcgccgcgccgccgcaactggcc
ggcgacgccccgccgctgctcggcgacagttggccgctggacgccctggaaggcgcgcgc
gcgcaactgcttggccgcctcgccgggttcgtccagcgcctcggtgccctggccgacgac
atggcgcggccacgcccactggccgagtgggcggaaaccctgcaagggctcatcgaccaa
ctgttcgacgaacgcgaggccggcgacaccctgctgctgctgtcccaggtctgtggcgcc
ttgcgtgaacaggccgaggctgccggcatcacgcgcccgctggaactggcgctggtgcgt
cagcacctggtggcggcgcttgaccagggcagcggcgcctcgggcttcctcaccggtgcc
gtgaccttctgcaccatggtgcccatgcgcagcctgccattccgccaggtctgcctgctc
ggcctggacgatggcgccttcccgcgccgcacgccggctgccggcttcgacctgatcgcg
cgcaaaccccgacgcggtgaccgcgcgcgccgcctggacgaccgctacctgctgctcgaa
acgctgcaatcggcgcgcgatggcctttacctcagcttcgtcggccgcgacccacgggat
aacgcccacctgccgccctccgtgctggtcagcgaactgctggaaaccatcgacctcacc
gctaccgctggcgagcacaaggccagcgagcgggtcctggtggcccatccgctgcagccc
ttcgcgtcgaccaacttctccggcggccaactggccggcttcgctgcgccctggttccgc
gcggcccggcgtttggcggaaacaccgcaagcggccgccgcgccgtttgcgttgccgctg
cctgaacccgatgccgactggctgaccctggaaccgtcccagttgatccagtgcttccgc
catccggcgcgcttcctcctcgaacagcgcctgggcctgcgcctggcgaaagccgaggaa
gccctggccagcgatgagcctttcagcctcgaaggccctgccttgcgcggcttgcgccag
ttggcgctggatgccgtggaacgtggctggtccgaggaggacgaacggcgtatcgcccgt
gccgccggctggctgccggtcggtgaggtaggtcacgcgctctggggccagttgcgcggc
ccggtgcacgccttcgccccgcgcctgctcgaagcccggcccgaggcggtgccgcagccg
ctgctggtggatatcgaactggccggtgtacgcatccacggctggctggatggcgtcacc
ccggaaggcctgttcggctggcgtctttaccgcctcggcgaatgggagctggcgcccttc
tggctgcggcatctgctgctcaatctgtccgccacgcccggcatcgcccgcgacagccgc
ctgctctccccggacggcgactggcaggccggccccctggccaacgcccgcgaactgctg
gagccctggctgcaggcctatcgcaaagccctgctcagccccctgcccctgctgaccaag
gccagctacggcttcgcccaggcctttcgcaaacccggccgcaaggaaccgatcgacgcg
gcccgttccaaggcccgggtggcctgggaaggcatcgacttcggcccggtcggcgaatcc
caggacccctggtacgcccttgccttccgcgaccgcgagcccctggacgagcgcttcgag
caactggccgaaaccctgctgggcccggcgctggatgcgctggcgggagatgatgatgag
gagtga
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