Thalassoporum mexicanum: Pse7367_2360
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Entry
Pse7367_2360 CDS
T02369
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pseu
Thalassoporum mexicanum
Pathway
pseu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pseu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pse7367_2360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pseu03019
]
Pse7367_2360
03400 DNA repair and recombination proteins [BR:
pseu03400
]
Pse7367_2360
Enzymes [BR:
pseu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pse7367_2360
Messenger RNA biogenesis [BR:
pseu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pse7367_2360
DNA repair and recombination proteins [BR:
pseu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Pse7367_2360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
SecA_DEAD
DUF2000
Motif
Other DBs
NCBI-ProteinID:
AFY70621
UniProt:
K9SKW9
LinkDB
All DBs
Position
2976884..2978746
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AA seq
620 aa
AA seq
DB search
MQIWRDERASVTDHSWQSINQKLKQIWDYDRLYPAQSQVIESMLQGRDTIAVMPTGSGKS
LCFQLPALIQDGLTIVISPLIALMTEQVKDLQTRGIAAATINSSLSKNQRYQVLRNLPNL
KLLYVSPETLLSAKIWQRLCKPDIHIANLIIDEAHCLVQWGSSFRPTYRRLGVVRAALAK
YQPEQSKENRKITIAAFTATADRFTQAEIVKCLELNNPHVININPYRSNLSLNVAIAWTP
LCRKQMALRFINQQRDQNGNLSAGLVYVRTRRGAELLTEWLLDNLCTDLTKLNQTASIAA
YHAGLPPIERNQIEQNWLAGACPIVVCTSAFGLGINNQQMRWVLHFQPPLTLSEYVQEIG
RAGRDGDPAAALLLISEPTGILDPSDRQLHNFFNQQQQNQQTQALALVQQIPPGGNYEQV
SRKMAKDNRKQGDRLALGLAILHSMDKLVWHDPHHYELVETVHNSSTIINRDVELNHDLT
RSHKDPWRSQRMVLPLVNRLQSMVVIIARRAINKVQNPDRDQSAQLDSYGRAIAQMQTYI
NDRGCRWRFILEAFSPGEDDLAPTSHSQVGELIAISNLNSVLMPKSSLPQLENGDLTHFK
CGHCDRCRQDANLTARASKF
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
gtgcagatatggcgagacgaaagagcaagtgtgaccgatcattcctggcagtcaattaat
caaaagctcaaacaaatctgggattacgatcgcctctatcctgcccagtcccaggtaatc
gagagcatgttgcaaggccgcgacacgatcgcagttatgcccactggcagcggtaaatca
ttgtgttttcaactgcctgcgctaattcaagacggtctcacgatcgtgatctcgccattg
atcgccttgatgaccgagcaagttaaagatctgcaaaccagggggatcgcagccgccacg
atcaacagcagccttagtaaaaatcagcgatatcaagtcctacgcaacttaccaaaccta
aaactactctacgtctcacccgaaaccctgctctcagccaaaatatggcaacggttatgt
aagccagatattcacattgccaatctgattatcgacgaagcccattgtctggtgcagtgg
ggtagctcgtttcggcctacctatcgccgtcttggcgtagtgcgtgcggctttagcaaaa
tatcaacctgaacagagcaaagagaataggaaaattacgatcgctgctttcacggccacc
gccgatcgcttcacccaggccgagatcgttaaatgtttagagctaaacaatccccatgta
ataaatatcaacccttatcgatcgaatttaagcttgaacgtggcgatcgcctggactccc
ctttgccgcaagcagatggccttaaggttcatcaaccagcagcgcgatcaaaacgggaat
ctctctgctggtctggtgtatgtgcgtacccgccgtggtgcggagttactgactgaatgg
ttattagacaatttatgcaccgatctgactaagctgaatcaaactgcgtcgatcgctgcc
tatcatgctggcttgccaccaattgagcgtaatcaaatcgaacaaaactggctagctgga
gcttgcccgatcgtggtttgtacctccgcttttggtctgggaattaataaccaacagatg
cgctgggtattgcattttcaaccacccttaactctatctgagtatgtacaggaaattggt
cgtgctggtcgggatggcgatccggctgcggctcttttgctgatcagtgagccgacggga
attttagaccctagcgatcggcaactccataactttttcaatcaacagcagcaaaatcaa
caaactcaagccctggccttagttcagcaaatcccccctggtggtaattatgagcaggtg
tctcgcaagatggctaaagacaatcgcaagcagggcgatcgcttggcgctggggttagct
attctacatagtatggacaagctggtttggcacgatccacatcattatgaactggttgaa
acggttcataactcttcaacgatcattaaccgcgatgtagagcttaatcacgatctcacc
agatctcataaagatccttggcgatcgcagcgtatggttttgcccttggtcaatcgcttg
caaagcatggttgtaatcattgccaggagagcaatcaacaaagttcaaaatcccgatcgg
gatcaatctgcccagctagatagttatggcagggcgatcgcccaaatgcagacttatata
aacgatcgcggctgtcgatggcgatttattctagaagcatttagcccaggtgaagatgac
cttgcccctacttcccatagtcaagttggtgagctaattgcaattagtaatctcaactca
gttttgatgcctaaatcatcactacctcagttagaaaatggcgatctgactcactttaaa
tgtggacattgcgatcgttgtcgccaggatgccaatctgaccgcaagagcttctaaattt
tag
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