Pseudoclavibacter triregionum: USB125703_00280
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Entry
USB125703_00280 CDS
T07344
Name
(GenBank) hypothetical protein
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
psev
Pseudoclavibacter triregionum
Pathway
psev03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psev00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
USB125703_00280
09124 Replication and repair
03420 Nucleotide excision repair
USB125703_00280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psev03021
]
USB125703_00280
03400 DNA repair and recombination proteins [BR:
psev03400
]
USB125703_00280
Enzymes [BR:
psev01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
USB125703_00280
Transcription machinery [BR:
psev03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
USB125703_00280
DNA repair and recombination proteins [BR:
psev03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
USB125703_00280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAG7844059
LinkDB
All DBs
Position
1:327889..329535
Genome browser
AA seq
548 aa
AA seq
DB search
MPNGPLIVQSDRTVLLEVNHPDAEDARHELAVFAELERAPEHIHTYRLTRLGLWNARAAG
HTADEMLATLEHHAKFPVPASVAVDLRETVGRYGRLVIERDDEGLVLASDDAAILRQVSG
NAKIREMLEGELGEGRVRVRDLARGELKQALVKLGWPAEDLAGYTPGTPHEIDLVEDGWA
MRGYQRQAVEQFFRGGSGVVVLPCGAGKTIVGAGAMAEADATTLILVTNTVSARQWRAEL
LRRTDLKPEDVGEYSGEVKEVKPVTIATYQILTSRRKGEYAHLSLLDALDWGLIVYDEVH
LLPAPVFKLTAELQARRRLGLTATLVREDCREGDVFSLIGPKRFDAPWKDIEAQGFISPA
ECFEVRVDLPYETRMEYAAANDDERYRLAATAPAKMDVVRALIRRHEGERVLVIGQYLDQ
IEELSAEFGVPQLTGQTPVAEREELFEAFRTGAEPILIVSKVANFSVDLPDASVAIQVSG
SFGSRQEEAQRLGRLLRPSSSGVSASFYTVVARDTVDQDFAQNRQRFLAEQGYAYSILDG
SAVLAPAS
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgccgaacggccccctcatcgtccagagcgaccgcaccgtcctgctcgaggtgaaccac
cccgacgccgaggacgcgcggcacgagctcgcggtcttcgccgagctcgaacgggccccc
gagcacatccacacctaccggctcacgcggctcggcctctggaacgcgcgcgccgcgggg
cacaccgccgacgagatgctcgcgaccctcgagcaccacgcgaagttccccgtgcccgcc
tcggtcgccgtcgacctccgcgagaccgtcggccgctacggccgcctcgtcatcgagcgc
gacgacgagggcctcgtgctcgcctcggacgacgcggccatcctccgccaggtctccggc
aacgcgaagatccgcgagatgctcgagggcgagctcggcgagggccgcgtgcgcgtgcgc
gacttggcccgcggcgagctcaagcaggccctcgtgaagctcggctggcccgccgaggac
ctcgccggctacacgcccggcaccccgcacgagatcgacctcgtcgaggacggctgggcc
atgcgcggctaccagcggcaggccgtcgagcagttcttccgcgggggctccggcgtcgtc
gtcctcccctgcggcgccggcaagacgatcgtcggcgcgggcgcgatggccgaggccgac
gcgacgacgctcatcctcgtcacgaacaccgtctccgcgcgccagtggcgggccgagctc
ctgcgccgcaccgacctgaagcccgaggacgtcggcgagtactcgggcgaggtgaaggag
gtgaagcccgtcacgatcgcgacgtaccagatcctcacctcgcgccggaagggcgagtac
gcccacctctccctcctcgacgcgctcgactggggcctcatcgtctacgacgaggtgcac
ctgctgcccgcccccgtcttcaagctcaccgccgagctgcaggcccgtcgccgcctcggc
ctcaccgcgacgctcgtgcgcgaggactgccgcgagggcgacgtcttctcgctcatcggg
ccgaagcgcttcgacgcgccgtggaaggacatcgaggcccagggcttcatctcgcccgcc
gagtgcttcgaggtgcgggtcgacctcccctacgagacgcggatggagtacgccgccgcg
aacgacgacgagcggtaccgcctcgccgcgacggcccccgcgaagatggacgtcgtccgc
gcgctcatccgccggcacgagggcgagcgggtgctcgtcatcggccagtacctcgaccag
atcgaggagctctcggcggagttcggcgtgccgcagctcaccggccagacgccggtcgcg
gagcgcgaggagctcttcgaggcgttccgcaccggcgccgagcccatcctcatcgtctcg
aaggtcgcgaacttctccgtcgacctgccagacgcctcggtcgcgatccaggtctcgggc
tcattcggctcgcggcaggaggaggcgcagcgcctcgggcgcctgctgcggccgtcctcg
agcggcgtgagcgcctcgttctacaccgtcgtcgcgcgcgacaccgtcgaccaggacttc
gcgcagaaccggcagcgcttcctcgccgagcagggctacgcgtactcgatcctcgacgga
tcggccgtgctcgccccggcgtcctag
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