KEGG   Pseudoclavibacter triregionum: USB125703_00773
Entry
USB125703_00773   CDS       T07344                                 
Symbol
radD_1
Name
(GenBank) Putative DNA repair helicase RadD
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
psev  Pseudoclavibacter triregionum
Brite
KEGG Orthology (KO) [BR:psev00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:psev02048]
    USB125703_00773 (radD_1)
Enzymes [BR:psev01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     USB125703_00773 (radD_1)
Prokaryotic defense system [BR:psev02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   USB125703_00773 (radD_1)
SSDB
Motif
Pfam: ResIII EcoEI_R_C SWI2_SNF2 DUF4145 DEAD Helicase_C HSDR_N HSDR_N_2 AAA_19 AAA_22
Other DBs
NCBI-ProteinID: CAG7844537
LinkDB
Position
1:859539..862946
AA seq 1135 aa
MGNFDFVRQTMPELHDDCARAESYLAADPRSACFYARRVGERLVERLYEVLGLRPPYQRD
FAALIHDPAFARAVGPAIKAKLNLLRKLGNVAVHDGRPVRPDTALQALRDLHHVMVWAGY
EHSSAPEASPVQAAFDPDLAKRSAPLSRDEVSQLAERFAAQDAAHARALATRDAQAAELE
REIAELRAQVAAAQDAKTLPFARDLSEAATRDAFIDLLLREADWPLDDPRDTEFPVHGMP
GPSGDGYVDYVLWGADGRPLALIEAKKTGASPEYGKQQALLYAHCLERDHGRRPVIFLTN
GAEHWIWDDARGYPPRPIHGFLTRSELERIVSRRDSARPLIEVAPTPEIAGRPYQLRAIR
AVGDAFEAKQRDALLVMATGSGKTRTVVALVDQLMRAGWVQRVLFLADRTALVQQAAGVF
RTLLPSVPTVNLISDRLADGRVYASTYQTMLGLINETDEASGVRRFVPGFFDLIVIDEAH
RSVYARYGAVFEYFDALLLGLTATPKDEIDRNTYRLFHLEDGVPTDAYSLEDAVADGYLV
PPVAVSVGTKFLRRGIRYDELSEAEKDDWDAIEWGDGEPPEAIDPEELNRFLFNADTVDK
VLATLMRDGHTVDEGERLAKTIIFAKNQDHAEFIERRFNAQYPELGGQAARVITYRTSHA
QSLIDAFSDPSREPSIAISVDMLDTGIDVPEVANLVFFKLVRSKAKFWQMIGRGTRLRPD
LYGPGRDKTDFFVFDFCGNLEFFSQDLPEQGGSTQKSLTQRLVEARMALLQQLDAAGDAP
GADVGERGSLAELRGDTVDELRAFVAGMTLDNVLVRPHRRAVERLGDDEAWRGRIDLVAT
ELLEVAGLPSAHRDADVVAKRFDLVILERQLAQLEGDVAVGERCRVTVQRLAEALLASST
AIPAVSAEQALLEEVASDAWWVGVTLPMLESMRRRLRGLMRFIERRRREPVFTDFQDELE
GREQIALPHVTPNVDYERFLQKARAWLREHENDLALQKVRRNRQLTTADLHALEALLVAD
GIGEQRTVERAARESGGLGLFIRSLVGLERDAAKEAFAEFLSEGAYSASQIRYIELIIDE
LTANGAMEARRLFESPYTDLASSPTSLFDTAQVTSLVARLEGVRRTAEPPAQAQA
NT seq 3408 nt   +upstreamnt  +downstreamnt
atgggcaacttcgacttcgtgaggcagacgatgcccgagctgcacgacgactgcgctcgg
gccgagtcgtatctcgcggccgatccgcgcagcgcgtgcttctacgcgcgccgcgtcggg
gagcggctcgtcgagcggctctacgaggtgctgggccttcgccctccatatcagcgcgac
ttcgccgccctcatccacgacccggccttcgcgcgcgccgtcggccccgccatcaaggcc
aagctcaacctgctccgcaagctcggcaacgtcgccgtccacgacggccgccctgtgcgg
cccgataccgcactccaggcgctccgcgacctgcaccacgtcatggtgtgggccggctac
gagcactcgagcgcgcccgaggcctcccccgtccaggccgccttcgaccccgacctcgcg
aagcgctccgcgcccctcagccgcgacgaggtgagccagctggccgagcggttcgccgcc
caggacgccgcccacgcccgcgccctcgccacccgcgacgcccaggccgccgagctcgag
cgtgagatcgccgagctgcgcgcgcaggtcgccgccgcgcaggacgcgaagaccctcccc
ttcgcccgcgacctctccgaggccgccacgcgcgacgcgttcatcgacctcctccttcgc
gaagcggactggccgctcgacgacccgcgcgacaccgagttcccggtgcacggcatgccc
ggcccgagcggcgacggctacgtcgactacgtgctctggggcgccgacggccgcccgctc
gccctcatcgaggcgaagaagaccggcgcgagccccgagtacggcaagcagcaggctctc
ctctacgcccactgcctcgagcgcgaccacgggcggcgccccgtgatcttcctcacgaac
ggagccgagcactggatctgggacgacgcccgcgggtacccgccgcgccccatccacggc
ttcctcacccggagcgagctcgagcgaatcgtgtcccgtcgcgacagcgcccgaccgctc
atcgaggtggcgccgacgccggagatcgccggacgcccctaccagctgcgcgccatccgc
gccgtcggcgacgccttcgaggccaagcagcgcgacgccctgctcgtcatggccaccgga
tcgggcaagacgcgcacggtcgtcgccctcgtcgaccagctcatgcgcgccggatgggtg
cagcgggtgctcttcctcgccgaccgcacggcgctcgtgcagcaggcggccggggtcttc
cgcacgctgctcccctccgtgccgacagtgaacctcatcagcgatcgcctcgccgacgga
cgcgtctacgcctcgacctaccagacgatgctcggcctcatcaacgagaccgacgaggcg
agcggcgtccgccgcttcgtgccagggttcttcgacctcatcgtcatcgacgaggcgcac
cggtccgtctatgccagatacggcgccgtcttcgagtacttcgacgcgctgctcctcggc
ctcaccgccacgccgaaagacgagatcgaccgcaacacctaccgcctcttccacctcgag
gacggcgtgcccaccgacgcgtactcgctcgaggatgccgtcgccgacggctacctcgtg
ccgccggtggcggtctcggtgggcacgaagttcctccgccgaggcatccgctatgacgag
ctcagcgaggccgagaaggacgactgggacgcgatcgagtggggtgacggggagcccccc
gaggcgatcgacccggaggagctcaaccgcttcctcttcaacgccgacacggtcgacaag
gtgctcgccacgctcatgcgagacggccacacggtcgacgagggggagcggctcgcgaag
acgatcatcttcgcgaagaaccaggaccacgccgagttcatcgagcggcgcttcaacgcg
cagtatcccgagctcggcggccaggccgctcgcgtcatcacctaccgcaccagccatgcg
caatcgctcatcgacgcgttcagcgacccgagccgggagccgagcatcgccatcagcgtc
gacatgctcgacaccggcatcgacgtgccggaggtcgcgaacctcgtcttcttcaagctc
gtgcgctcgaaggcgaagttctggcagatgatcggccgcggcactcgcctgcgccccgac
ctctacggccccggtcgcgacaagaccgacttcttcgtcttcgacttctgcggcaacctc
gagttcttcagccaggacctgcccgagcagggcggctcgacgcagaagtcgctcacccag
cgtctcgtggaagcgcggatggcgctgctgcagcagctcgacgcggctggggatgccccg
ggcgccgacgtcggtgagcgtggctcgctcgccgagctccgcggcgacaccgtcgacgag
ctgcgcgcgttcgtggcggggatgacgctcgacaacgtgctcgtgcgcccccaccgccgc
gcggtcgagcgtctcggcgacgatgaggcgtggcgcggccggatcgacctcgtcgcgacc
gagctgctcgaggtcgccggcctgccgtccgcgcaccgcgacgccgacgtcgtggcgaag
cgcttcgatctcgtcatcctcgagcggcagctcgcccagctcgagggcgacgtcgccgtc
ggcgaacgctgccgggtgacggtgcagcgtctcgccgaggccctcctcgcctcctcgacc
gcgatccccgccgtctccgccgagcaggcactgctcgaggaggtcgcctccgatgcctgg
tgggtgggcgtcacgctgccgatgctcgagtcgatgcggcggcgcctgcgggggctcatg
cgcttcatcgagcgccgtcggcgcgagcccgtgttcaccgacttccaggacgagctcgag
ggccgcgagcagatcgcgctgccgcacgtcaccccgaatgtcgactacgagcgcttcctg
cagaaggcccgcgcctggctgcgcgagcacgagaacgacctcgccctccagaaggtgcgc
cgcaaccgccagctcacgaccgccgacctccacgcgctcgaggcgctcctcgtcgccgat
ggcattggcgagcagcgcaccgtcgagcgcgcggcgcgcgagtcgggcggcctcgggctc
ttcatccgcagcctcgtcgggctcgagcgcgacgccgccaaggaggcgttcgcggagttc
ctcagcgagggggcgtacagcgcgagccagatccgctacatcgagctcatcatcgacgag
ctcaccgcgaacggagccatggaggcgaggcggctcttcgagtcgccgtacaccgacctc
gcgtcctcgccgacgtcgctcttcgacacggcgcaggtcacctcgctcgtggcgcgcctg
gagggggtgcggcggacggccgagccgccggcgcaggcgcaggcgtga

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