Pseudoclavibacter triregionum: USB125703_01716
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Entry
USB125703_01716 CDS
T07344
Symbol
hrdB
Name
(GenBank) RNA polymerase principal sigma factor HrdB
KO
K03086
RNA polymerase primary sigma factor
Organism
psev
Pseudoclavibacter triregionum
Brite
KEGG Orthology (KO) [BR:
psev00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
USB125703_01716 (hrdB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psev03021
]
USB125703_01716 (hrdB)
Transcription machinery [BR:
psev03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
USB125703_01716 (hrdB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
CAG7845450
LinkDB
All DBs
Position
1:1914551..1916446
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AA seq
631 aa
AA seq
DB search
MAARAPKTEAETSDQTAAPDAPAKPKRAPRKTAAQKAAEAAAAEAATAEAPAEEAPAKPK
RAPRKTAAQKAAEAAAAEAATAEAPAEEAPAKPKRAPRKKAAQKAAEAAAAEDATAEAPA
EEAPAKPKRAPRKTAAQKAAEAAAAEAATAETPAEEAPAKPKRAPRKTAAKKAAEAAAAE
AETADATDAEAEAAPAKPKRATRKPDAKPAAKTAKAPAKGAKAKASDEDEAELDEDVVEP
ELDDEAIEDVDAVDAEDADAEEVADDDAEADDAAAPAKTARAGKKADDDDDEMDDSDAPL
TAVAAGAMVLSATDDEDETPVYSATITGATADPVKDYLKQIGKVALLNAAEEVDLAMRIE
AGLFAEEKLKTEAGTLSKQLERELKWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQF
LDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVIN
KLARVQRQMLQDLGREPTPEELAQELDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGD
LIEDTEAVVPADAVSFTMLQRQLESLLDSLSEREAGVIKMRFGLGDGMPKTLDQIGEEFG
VTRERIRQIESKTMAKLRHPSRSQSLRDYLE
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggcagcacgcgcaccgaagaccgaggccgagacctcggaccagaccgcagcgcccgac
gccccggcgaagccgaagcgcgcgccgcgcaagacggccgcccagaaggccgctgaggcc
gccgccgcagaggccgcgaccgccgaggcccctgcggaagaggcgccggcgaagccgaag
cgcgcgccgcgcaagaccgccgcccagaaggccgctgaggccgccgccgcagaggccgcg
accgccgaggcccctgcggaagaggcgccggcgaagccgaagcgcgcgccgcgcaagaag
gccgcccagaaggccgccgaggccgccgccgccgaggacgcgacggcagaggctcccgct
gaggaggcgccggcgaagccgaagcgcgcgccgcgcaagaccgccgcccagaaggccgcc
gaggccgccgccgcagaggccgcgaccgccgagacccctgcggaggaggcgccggcgaag
ccgaagcgcgcgccgcgcaagaccgccgcgaagaaggccgccgaggccgccgccgcggag
gcggagaccgccgacgcaaccgacgccgaggccgaggccgcgcccgcgaagcccaagcgc
gcgacccgcaagcccgacgcgaagcccgcggccaagacggcgaaggcgcccgcgaagggc
gccaaggccaaggcgtccgacgaggacgaggccgagctcgacgaggacgtcgtcgagccc
gagctcgacgacgaggccatcgaggacgtcgacgcggtcgacgccgaggacgccgacgcc
gaggaggtcgccgacgacgacgccgaggccgacgacgcggccgcccccgcgaagaccgcc
cgcgccggcaagaaggccgacgacgatgacgacgagatggacgactcggacgcgccgctc
accgcggtcgccgccggcgccatggtcctctccgcgacggacgacgaggacgagacgccc
gtctactcggccacgatcaccggcgccaccgccgatcccgtcaaggactacctcaagcag
atcggcaaggtcgcgctcctcaacgccgccgaggaggtcgacctcgccatgcgcatcgag
gcgggcctgttcgccgaggagaagctcaagaccgaggccggcacgctctcgaagcagctc
gagcgcgagctcaagtgggtcgcccgcgacggccagcgcgcgaagagccacctcctcggc
gcgaacctccgcctcgtcgtctcgctcgcgaagcgctacacgggccgcggcatgcagttc
ctcgatctcatccaggagggcaacctcggcctcatccgcgccgtcgagaagttcgactac
accaagggcttcaagttctcgacgtacgcgacgtggtggatccgccaggcgatcacccgc
gccatggccgaccaggcccgcacgatccgcatcccagtccacatggtcgaggtcatcaac
aagctcgcccgcgtgcagcgccagatgctccaggacctcggccgcgagcccacgcccgag
gagctggcccaggagctcgacatgacgcccgagaaggtcgtcgaggtgcagaagtacggc
cgcgagccgatctcgctccacacgcccctcggcgaggacggcgactcggagttcggcgac
ctcatcgaggacaccgaggccgtcgtgccggccgacgccgtgtcgttcacgatgctccag
cgccagctcgagtcgctcctcgactcgctctccgagcgcgaggcgggcgtcatcaagatg
cgcttcggcctcggcgacggcatgccgaagacgctcgaccagatcggcgaggagttcggc
gtcacgcgcgagcgcatccgccagatcgagtcgaagacgatggccaagctccgccacccc
tcgcgctcgcagtcgctgcgcgactacctcgagtag
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