Pseudoclavibacter triregionum: USB125703_01742
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Entry
USB125703_01742 CDS
T07344
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
psev
Pseudoclavibacter triregionum
Brite
KEGG Orthology (KO) [BR:
psev00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psev03016
]
USB125703_01742 (rnd)
Enzymes [BR:
psev01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
USB125703_01742 (rnd)
Transfer RNA biogenesis [BR:
psev03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
USB125703_01742 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
CAG7845476
LinkDB
All DBs
Position
1:complement(1946203..1947396)
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AA seq
397 aa
AA seq
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MTQADEARLGEGDLDLIDDPESYLEGLERLAAGEGPVAVDAERASGYRYSDRAYLVQLFR
RGSGTLLLDPIALGTLVDVQAVIGEEEWIFHAATQDLPCLRELQMDPARIFDTELAARLL
GMPRVGLGAVVEDVLGIELAKAHSADDWSARPLPASWLAYAALDVELLVDVRDELERRLE
DQGKLEWAREEFDDILRRPLGVKKEEPWRKYAGTRARNPRALAVARELWTARDELARTTD
TAPGRLVPDRSLSAVVQALPKSKQELAARKDFQGRASRPELDRWWSAIERGLASEEPPKA
AASGERIPPHRSWEQRHPEAHARLQALQPIVTELAERLGMPRENLLTPDHLRRLAWEPPA
SSTPDAVAAHLIESGARPWQADLVAAPLAAALVALGQ
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
gtgacgcaggctgacgaagcgcgcctcggcgagggcgacctcgacctcatcgacgatccc
gagtcgtacctcgaggggctcgagcgcctcgcggccggcgaggggcccgtcgccgtcgac
gccgagcgcgcctccggctaccgctactcggatcgcgcctacctcgtgcagctcttccgc
cgcggctccggcaccctcctgctcgaccccatcgcgctcggcaccctcgtcgacgtgcag
gccgtcatcggcgaggaggagtggatcttccacgccgccacgcaggacctgccctgcctg
cgcgagctgcagatggacccggcgcgcatcttcgacacggagctcgccgcgcgcctgctc
gggatgccgcgcgtgggcctcggcgccgtcgtcgaggacgtcctcggcatcgagctcgcg
aaggcgcactcggcggacgactggtcggcccggcccctccccgcgagctggctcgcctac
gccgcgctcgacgtggagctcctcgtcgacgtccgcgacgagctcgagcggcgcctcgag
gaccagggcaagctcgagtgggcccgcgaggagttcgacgacatcctccgccgccccctc
ggcgtgaagaaggaggagccctggcggaagtacgccgggacgcgcgcgcggaacccgcgc
gccctcgcggtcgcccgcgagctgtggacggcccgcgacgagctcgcccgaacgaccgac
acggcccccggccgcctcgtgcccgatcgctccctctccgccgtcgtgcaggccctgccg
aagtcgaagcaggagctcgccgcccggaaggacttccagggccgcgcctcccgccccgag
ctcgaccgctggtggtcggccatcgagcgcggcctcgcgagcgaggagccgccgaaggcc
gccgcctccggcgagcgcatcccgccgcaccgctcgtgggagcagcgccatcccgaggct
cacgcgcgcctccaggccctccagccgatcgtcaccgagctcgccgagcgcctcggcatg
ccgcgcgagaacctcctcacgccggatcacctgcgccggctcgcgtgggagccgccggcc
tcctcgacgccggacgccgtcgccgcccacctcattgagtcgggcgcccgaccatggcag
gcggatctcgtcgcggcgccgctcgcggccgcgcttgtcgcactcggccaatag
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