Paracoccus seriniphilus: JHW44_06220
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Entry
JHW44_06220 CDS
T08801
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
psew
Paracoccus seriniphilus
Brite
KEGG Orthology (KO) [BR:
psew00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psew03016
]
JHW44_06220 (rnd)
Enzymes [BR:
psew01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
JHW44_06220 (rnd)
Transfer RNA biogenesis [BR:
psew03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JHW44_06220 (rnd)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
WCR15215
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All DBs
Position
1263182..1264351
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AA seq
389 aa
AA seq
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MVTITRTEELARFCEVAKTQPYVTVDTEFLRERTYWSKLCLIQMALPPSAPVGEKSGEAV
LVDPLASGLSLEPLYDLFRHKGTVKVFHAARQDLEIFFHDAQLFPEPLFDTQVAAMVCGF
GEQVGYETLVRKIAKANLDKSSRFTDWSRRPLSDAQKSYALADVTHLRGIYEFLDEKLKA
NGRESWLAEEIAVLENPETYITRPEEAWLKVRTRTNSPRFLAILRELATFRESYAQERDV
PRSRVYKDDAMIELASTKPSNEAELGRSRLLLREARKGDIAAGILAAIKAGLETKDLPRP
KNDPQGKPGNAALSDLLRVLLKAKAEAAGVAPKLIASSADLDAIATGERDLPALKGWRAE
VFGNDALRLAEGEIALSARNGSVHVVPTA
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
attgtcacgatcacccggaccgaggaactggcgcgtttttgcgaagttgcgaaaacacag
ccctatgtcacggttgataccgaattcctgcgcgaacgcacctattggtcgaagctgtgc
ctgatccagatggcattgccgccctcggcaccggtcggagaaaaatccggcgaggccgtg
ctggtcgatccgctggccagcggcttgtcgctggagccgctgtatgacctgtttcgccac
aagggcaccgtcaaggtgttccatgccgcgcggcaggatctcgagatcttctttcacgac
gcacaactgttccccgaaccgctgtttgatacccaggtcgcggcgatggtctgcggcttt
ggcgaacaggtcggctatgaaacgctggtgcgcaagatcgccaaggccaatctcgacaag
tcctcgcgcttcacggattggtcgcgccggcccttgtcggatgcacagaaatcctatgcg
ctggcggatgtgacccatctgcgcggcatctatgagtttctggacgagaagttgaaggcc
aacgggcgcgaatcctggctggccgaggagattgcggttctggaaaacccggaaacctat
atcacccgacctgaggaggcctggctgaaggtccgcacgcgcacgaattcgccacgtttc
ctggccattctgcgtgaactggcaacctttcgcgagtcctatgcgcaagagcgcgatgtc
ccccgctcgcgggtctacaaggacgatgccatgatcgaactggcctcgaccaagccgtcg
aatgaggccgaactggggcgttcgcgtctgttgctgcgtgaggcccgcaagggcgatatc
gcggccggaatcctggctgccatcaaggcgggcctggaaaccaaggatctgccccgcccc
aaaaacgatccgcagggcaaacccggaaatgccgcgctgtcggatctgttgcgggttctg
ctgaaagccaaggccgaggcagcaggggttgcccccaagctgatcgcctcatctgccgat
ctggacgccattgcgaccggtgagcgcgatctgcccgcgctgaagggatggcgcgccgag
gtctttggcaatgatgccctgcggctggcagaaggcgagattgccctgtcggcgcggaat
ggatcggtccatgtggtgccgacggcctga
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