Paracoccus seriniphilus: JHW44_06615
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Entry
JHW44_06615 CDS
T08801
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psew
Paracoccus seriniphilus
Pathway
psew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JHW44_06615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psew03019
]
JHW44_06615
Enzymes [BR:
psew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JHW44_06615
Messenger RNA biogenesis [BR:
psew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JHW44_06615
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Utp25_C
DUF7069
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WCR15227
LinkDB
All DBs
Position
complement(1350570..1351796)
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AA seq
408 aa
AA seq
DB search
MGIDPRINANIAALGLNQPTPIQEKGIPAIVEGRDVLGLAQTGTGKTAAFGLPMLTRLIK
FGKKPDPRTCRALILAPTRELATQIATNIDAYAEGTPIRSFRVVGGASINVQTERLSRGV
DVLIATPGRLMDLIERRAISLEATTYLVLDEADQMLDIGFIHTLRKIARMLPRERQTLMF
SATMPKLMSELSDTYLTNPVKVAVNPPGQAAKKIEQGVHFVSQGDKATLLAEYMSKHTGE
LAMVFGRTKHGCEKLTKLLDKWGFAVAAIHGNKSQGQRERALQAFRNGETKVLVATDVAA
RGLDIPDVAHVYNYDLPNVPENYVHRIGRTARAGREGRAVAFCAPAEVGELRAIERAMKA
PIPVIGGEVPTSIPAAARGGRMRGKPMDAGGQKRPARRPSRKPRNQQA
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggggatcgatccgcgcatcaatgcgaatatcgccgcattggggctgaatcagcccacg
ccgatccaggaaaagggcattccggccatcgtggaaggtcgcgatgttctgggccttgcc
cagaccggcacgggcaagacggcagccttcggactgccgatgctgacccgcctgatcaag
ttcggcaagaaacccgatcccaggacctgccgcgcgctgatcctcgcaccgacgcgcgaa
ctggcaacccagattgccaccaatatcgacgcctatgccgaaggcacgccgatccgcagc
tttcgtgttgtgggcggtgcctcgatcaatgtgcagaccgaacgtctgtcacggggcgtc
gatgtgctgattgcaacgccgggccgtctgatggacctgatcgagcgtcgcgccatcagc
ctggaagcaacgacttacctggtgctggacgaggccgatcagatgctggacatcggcttc
atccacacgctgcgcaagatcgcacggatgctgcctcgtgaacggcagacgttgatgttt
tcggccaccatgccgaagctgatgtcggaactgtcggacacctatctgaccaatccggtc
aaggttgccgtcaaccctccgggacaggccgccaaaaagatcgaacagggcgttcatttc
gtctctcagggagacaaggccaccctgctggcggaatatatgtcaaagcacaccggcgaa
ctggccatggtctttggccgcacgaaacatggttgtgaaaagctgaccaaactgcttgac
aaatggggctttgcggtcgccgcgatccacggcaacaagagccaggggcagcgcgaacgc
gcgctgcaggcgttccgcaacggcgaaaccaaggttctggttgccaccgacgtggcggcc
cgtggtctggacattcccgatgtggcccatgtctacaactatgacctgcccaacgttccc
gagaactatgtgcaccggattggccggaccgcgcgtgcgggccgcgaaggacgggcggtc
gccttctgcgcaccggcagaggtcggagaactgcgcgccatcgaacgcgccatgaaagca
ccgatcccggtcatcggcggcgaggttcccacctcgatccccgcagccgcgcgcggtgga
cgcatgcggggcaagccgatggatgccggcggtcagaaacgcccggcgcgccgtccgtcg
cgcaagcccaggaaccagcaggcctga
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