Paracoccus seriniphilus: JHW44_10100
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Entry
JHW44_10100 CDS
T08801
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psew
Paracoccus seriniphilus
Pathway
psew03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JHW44_10100 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psew03400
]
JHW44_10100 (mfd)
Enzymes [BR:
psew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JHW44_10100 (mfd)
DNA repair and recombination proteins [BR:
psew03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JHW44_10100 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
AAA_30
MFD_D3
AAA_16
Cas3-like_C_2
RecG_dom3_C
UB2H
DUF4410
SecA_DEAD
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WCR13289
LinkDB
All DBs
Position
complement(2064791..2068255)
Genome browser
AA seq
1154 aa
AA seq
DB search
MADQLILSGAPEGYDAALVAREASRGQPVIHIARDDRRMAAMRAALAFLAPGLAVLDFPA
WDTTPYDRVSPAPEVQAARMATLAGLAQGVIKGPFVLLTTLNGALQRVPARELVSQASFA
AQVGNRIDEAGLRAFLVRMGFVQSPTVTEPGDYAVRGGIIDIYPPGESGPVRLDLFGDVL
DGARRFDPVTQRTTEKLSRVEIAPMSEVILDEPAITRFRQNYRAEYGGGTNDPLYEGVSA
GRKMAGVEHWLPWFHDHMENLFDYLPGASVMLDDHINQVITARREMIEEQFDARRAAMAA
KGRSDSAYKPVPPDLMFPTESEWQSWLANHRTLRLSVLAQPPGPGVLDAGGRAGRNFAPE
RQAESINLFKELADHIKARAKTGRVVVASFSEGARDRLRGLLADEGLSGLKQISDIRDLP
DASGSIGLSIWPLEEGFTASGRALGSITVISEQDVLGDRLIRGARKRRRAENFLQDTTSL
TPGDLVVHVEHGIGRYNGLETITAAGVPHDCVALEYAGGDRLFLPVENIELLSRYGHEAG
LLDRLGGGAWQARKAKLKERIRLIADKLMRVAAERLLRPAPVLEPEDHEWQAFSARFPYS
ETEDQAAAIEDVLEDLSAGRPMDRLVVGDVGFGKTEVAMRAAFVAASQGKQVAVVAPTTL
LARQHFRSFAERFRGTAINVRALSRFVPAKEAAQTRAGLADGSVDIVVGTHAVLAKQVRF
KDLGLLVIDEEQHFGVAHKERLKELRSDIHVLTLTATPIPRTLQLSLTGVRDLSVIGTPP
VDRLAIRTYSSEFDSVTVREALLREKYRGGQSFFVVPRLSDLPEVEDWLKENMPEVSYIV
AHGQLAAGDLDQRMNAFYDGSHDVLLATTIVESGLDIPTANTMIVWRADMFGLSQLYQIR
GRVGRSKTRAYCYLTTRPRSPLTPQAMRRLKFLGSMDGLGAGFNLASQDLDLRGAGNLLG
EEQSGHIKEVGFELYQAMLEETIAKLKSGEIEGTPEDEWAPQLNLGVPVTIPESFVPDLD
VRLGLYRRLAELTTKVELEGFAAELIDRFGPLPKEVNTLLLVIRIKAMAKRACISRLDAG
PKGATIQFHDDKFPNPAGLVEFLTDQRGLAKVTDNKIVVRRDWKSDADRIKGAFSIARDL
AAKAKGQSRAKAKT
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccaactgatcctttccggcgcccccgagggctatgatgcggccctggttgcg
cgagaggccagccgcggccagcccgtcattcatattgcccgtgacgaccggcgcatggcc
gcgatgcgcgccgcgcttgcctttctggcgcccggactggcggtgctggatttcccggca
tgggacaccaccccctatgaccgcgtctcgcccgcgcccgaggtgcaggccgcgcggatg
gcgacgctggccggtctggcgcagggggtgatcaaggggcctttcgtgctgctgacgacg
ctgaacggcgccctgcagcgggttccggcgcgcgagctggtgtcacaggccagctttgcc
gcgcaggtcggcaaccgcattgacgaggccggcttgcgcgcctttctggtgcgcatgggc
tttgtgcaatcgcccacggtgaccgagccgggcgattatgccgtgcgcggcgggatcatc
gatatctacccgcccggcgaatccggtccggtccgtctggatctgttcggcgatgttctg
gacggggcgcgccgtttcgatccggtgacccagcggaccaccgagaaactgtcgcgtgtc
gagattgccccgatgtccgaggtgattctggacgaacccgcgatcacccgttttcggcag
aactatcgggccgaatatggcggcggcaccaatgatccgttgtacgagggtgtcagcgcg
ggccgcaagatggccggagtcgagcattggctgccctggtttcacgaccatatggagaac
ctgttcgattacctgcccggtgcctcggtcatgctggatgatcacatcaatcaggtcatc
accgcccggcgcgagatgatcgaagagcaattcgacgcacgtcgcgccgcgatggcggcc
aaggggcgcagcgattccgcctataagcccgttccgcccgacctgatgtttccgaccgaa
agtgaatggcagtcctggcttgccaatcaccgcacgctgcggctgtcggttctggcgcag
ccaccgggaccgggcgtgctggatgccggtggacgggcagggcggaatttcgcgcccgag
cggcaggcggaatcgatcaatctgttcaaggaactggccgatcatatcaaggcgcgtgcg
aaaaccggtcgggtggtcgtggccagcttctcggaaggggcgcgcgaccgtctgcgcggg
ctgctggccgatgaggggctcagcggtctgaagcagatttcggatattcgcgacctgccg
gatgcgtcgggcagtatcggcctgtcgatctggcctctggaggagggtttcaccgcctcg
ggccgtgcattgggatcgatcacggtgatctcggaacaggacgtgctgggcgaccgcctg
attcgcggggccagaaaacgccgccgggccgagaatttcctgcaggacacgaccagcctg
acgcccggcgacctggtggttcatgtcgaacatggaatcggccgctacaacgggctggaa
accatcactgccgctggcgtgccccatgactgcgtggcgctggaatatgccggtggtgac
aggctgttcctgccggtcgagaatatcgaactgctcagccgctatggccatgaagcgggc
ctgctggatcgtctggggggcggtgcatggcaggcgcgcaaggccaagttgaaggagcgg
atcaggctgatcgcggacaagctgatgcgtgttgccgccgaacgcctgctgcgtcccgca
ccggtgctggaacccgaagatcacgagtggcaggccttctctgcccgttttccctatagc
gaaaccgaggatcaggccgccgccatcgaggatgttctggaagatctgtccgcaggccgt
ccgatggaccggctggttgtcggagatgtcggcttcggcaagaccgaggtcgccatgcgc
gcggcctttgtcgcggcctcgcaaggcaaacaggtggcggtcgtggcgccgacgaccctg
ctggcgcgacagcacttcagatcatttgccgaacgttttcgtggcaccgccatcaatgtg
cgcgcgctgtcacgctttgttcccgcgaaagaggccgcgcagacgcgggcggggctggcc
gatggttcggtcgatatcgtcgtgggcacccatgccgtgctggccaaacaggtgcggttc
aaggaccttgggttgctggtcatcgacgaggaacagcatttcggggtcgcccataaggaa
cgactgaaggaactgcgcagcgatattcatgtgctgaccctgacggcgacgccgattccg
cgcaccctgcagctgtccctgaccggtgtgcgcgatctgtcggtcatcggcacgcccccc
gtggaccggctggccatccgcacctattccagcgagttcgattcggttaccgtccgcgag
gccctgctgcgcgagaaataccgtggcggacaaagcttcttcgtggtgccgcggctgtcg
gatctgcccgaggtcgaggactggctgaaggagaacatgcccgaggtcagctatatcgtt
gcccatggtcagcttgctgcgggcgatctggatcagcggatgaacgccttttacgacggc
agccatgatgtcctgctggccacgaccatcgtggaatccggactggatatcccgaccgcg
aataccatgatcgtctggcgtgccgatatgttcggcctgtcacagctctatcagatcagg
ggacgggtcgggcggtccaagacgcgggcttattgctatctgacgacccgcccgcgcagc
ccgctgacgccacaggcgatgcggcggctgaaattccttggctcgatggacggtctgggc
gcgggcttcaacctggcctcacaggaccttgatctgcgcggagcgggcaatctgctgggc
gaggagcaatccggccatatcaaggaggtcggcttcgaactctatcaggcgatgctggaa
gaaacgatcgccaagctgaaatcgggcgagatcgagggcacgcccgaggatgaatgggcg
ccgcagctgaatcttggcgtgccggtcaccattcccgaaagcttcgtgccggatctggat
gtcaggctgggcctctatcgccgtctggccgagctgaccaccaaggtcgagttggaaggt
ttcgccgccgaactgatcgaccgtttcggtccgctgcccaaagaggtcaatacgctgctg
ctggtcatccgcatcaaggcgatggcgaaacgtgcctgtatctcgcggctggatgccgga
cccaagggcgcgaccatccagttccatgacgacaaattccccaaccccgccggtctggtc
gaattcctgacggatcagcgcggcctggccaaggtgaccgacaacaagatcgtcgtccgc
cgcgactggaagagcgacgcggaccgcatcaagggggccttctcgatcgcccgcgacctg
gcggccaaggccaaggggcagtccagggcaaaggccaagacgtga
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