Paracoccus seriniphilus: JHW44_16455
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Entry
JHW44_16455 CDS
T08801
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psew
Paracoccus seriniphilus
Pathway
psew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JHW44_16455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psew03019
]
JHW44_16455
03009 Ribosome biogenesis [BR:
psew03009
]
JHW44_16455
Enzymes [BR:
psew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JHW44_16455
Messenger RNA biogenesis [BR:
psew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JHW44_16455
Ribosome biogenesis [BR:
psew03009
]
Prokaryotic type
rRNA helicases
JHW44_16455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
WCR16046
LinkDB
All DBs
Position
p449297:complement(13845..15746)
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AA seq
633 aa
AA seq
DB search
MISENIAQPLAAALASKGYASLTAVQDSVLTPEAANRDLLVSAQTGSGKTVAFGLAIADD
ILGAGAQLDPTDRPLALVIAPTRELALQVARELSWLYEQMGAQIATCVGGMDFRNERRAL
ARGAHIVVGTPGRLRDHIERSSLDLSGLKAAVLDEADEMLDLGFREDLEFILQSAPVSRR
TLMFSATVPNAIEKLAKEFQKDALRIVAAGESRQHGDIEYRALNVAPRDREPAIFNLLRL
HEARTAIVFCKTRANVNHLLARMGNRGFKAVALSGELSQQERTHALQALRDGRAQVCVAT
DVAARGIDLPGLELVIHADLPSNSETLLHRSGRTGRAGAKGVSALIVPPAEQKKAQRLLK
TARLEATWGPAPSAEDVRARDDARIMDHPSLQDAEDDNEALSKTLLEQFGAERVAAAFIR
LWRDGRPTPEELQAPRLQQNQTPSAPRERGEFGPSVWFSLSVGHTGRAEARWLLPKICEA
GNITKDGIGAIRVREDETFVQISEELASRFGPQSELEPDLTMTRLEGQPSLDRPAPSFSR
DKPRHNAKPSGPRKEFSKDKARAPRAAEAASDGEGKPARARKERWTPTDRKEKAVRDGAL
KPKSKKPAAGKARWAKPAASGRNASAKSAGRRG
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgattagtgaaaatatcgcgcagcccctggctgcggcactggcatccaaagggtatgcc
agcctgacagctgttcaggattccgttctgacccccgaagcggcgaaccgggatcttttg
gtttccgcccagacgggctctggcaagaccgtggcgttcggcctggcaattgccgacgac
attctgggcgcgggcgcgcagcttgaccccaccgaccggccgctcgccctggtcattgcc
cccacccgcgagctggccttgcaggtcgcccgcgaattgtcctggctgtatgaacagatg
ggcgcacagatcgcaacctgtgtcggcggcatggattttcgcaatgaacgccgggcactg
gcacgcggcgcgcatatcgtcgtcggcacccccggtcgtttgcgtgaccatatcgagcgc
agcagccttgacctgtccggcctgaaagccgccgttctggacgaagccgatgaaatgctc
gatctcggctttcgcgaggatctggagttcatcctgcaatcggcacctgtatcacgccgg
acgttgatgttctcggcaacggtgcccaatgccatcgagaaactggccaaggaattccag
aaggacgccctgcggatcgtggccgcgggtgaatcgcgccagcatggtgatatcgaatat
cgcgcgctgaatgttgcgccgcgtgaccgtgaaccggccatcttcaacctgctgcgcctg
cacgaagcccgcaccgccatcgtcttttgcaagacgcgcgccaatgtgaaccatctgctg
gcccgcatgggcaatcgcggcttcaaggccgtggcactgtcgggcgagctgagccagcag
gaaagaacccatgccctgcaggcccttcgcgacggacgggcacaggtttgcgttgccacc
gatgtggctgcccgcggcatcgacctgccggggctggagctggtgatccatgcggatctt
ccctcgaactcggaaaccctgctgcaccgttcgggccggaccggacgcgctggcgctaag
ggcgtctcggctctgatcgtgccgccggcggaacagaagaaggcgcagcgcctgctgaaa
accgctcgtctcgaggccacatggggccccgccccttcagccgaagatgtgcgcgccagg
gatgacgcccgcatcatggaccatccctcgctgcaagatgccgaggacgataacgaggcg
ctgtccaagaccctgctggagcaattcggcgccgaacgggttgccgcagcattcatccgc
ttgtggcgtgatggacggcccacgccggaagaactgcaggccccgcgtctgcaacagaac
cagaccccttcagccccccgcgagcgtggcgagttcggaccttcggtctggttctctctc
tcggtgggtcataccggccgcgccgaagcgcgctggctgctgcccaagatctgtgaagcc
ggtaatatcaccaaggacgggatcggtgcgatccgtgtccgcgaagatgagaccttcgtt
cagatttccgaagaactggcctcgcgcttcggcccgcagtccgaactggaacccgatctg
accatgacccgtcttgaaggtcagcccagcctcgaccggcccgcgccatccttcagccgg
gacaagccgcgtcacaatgccaagccctccggcccgcgcaaggagttcagcaaggacaag
gcgcgcgccccccgggctgccgaagccgcttctgacggcgagggcaaacctgcacgggcc
cgcaaggaacgctggacgccaactgaccgcaaggaaaaggccgtgcgtgatggtgccttg
aagcccaagagcaagaagccggcagcaggcaaggcgcgttgggccaaacccgcagcctcg
gggcgcaatgcatctgccaagagcgctggccgtcgcggctga
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