Polypterus senegalus (gray bichir): 120514191
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Entry
120514191 CDS
T08668
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120514191 (col17a1b)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
120514191
NCBI-ProteinID:
XP_039590345
LinkDB
All DBs
Position
1:complement(297032997..297104267)
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AA seq
1499 aa
AA seq
DB search
MDVLNTKKSKNSSRSQEGQTKVLTETVTTTTRLTTRPPKGSSSSISGGQRGSTSNSAGLG
MEKKVLSQGTSSYVSSTTGGGNSKVNFSSTGSRRGQGSSSSLTYSPVSTLERKVIISRNG
GYEGSSSGNSSPEYTRKEFITTSSTSATRGRSQSRESEIRARLQSASPSTRWTELDDVKR
LLKGGRSASVSPTRSPSNTLPIPKKASVETKTVMESSHSVSAFNEPPSMGRDYTSYMYST
LPAGSSMVNGYSYFNNTTNLSPGSSLLNTTSPSSLSVHGLPNNLTLNSAPMTSTLSTSST
VYGVQNNLGTNSASGNSNVPQSPTGYGVQKNMAYMAQSPTLASTGVSTTTVTQTRDLNDD
VFRKDYKFVLLEKENAPAKKDTELLIMAKDSGKLFTTATTNGVGSSFSDDTLKKEKMIVS
SSTDAAVKSEANAGFGSYKVSTKDKATYAEIRKDDDYGGGGGGGGGGCCGRCSWWKWLLG
LLLGLLLLLGLLFGLIALAEEVNKLKNRVAKLESDTIRSSRVVSTDINGQNPILERSISG
VNLAVGESDSNIRLLVKETLKAELQSDSIKAYVKGEKGDSGPKGDTGSQGPKGDIGNVGP
PGLPGIPGHAGPEGPKGQKGSQGDHGAEGQMGLRGRDGQPGPRGEPGPPGFGEKGEKGSP
GDSGPPGVTGLPGPMGIKGAMGLQGPPGPIGSPGPQGFRGETGQPGPKGDKGIVGSAGSK
GDQGEKGPRGPPGEPGLRGLPGPAGEAGAKGSAGPPGADGLKGSRGEPGPMGLTGIRGPS
GPPGDAGQPGLPGLQGPPGLPGNPGAPGSKGDHGEPGRIINAEGSKAVALPGPPGPPGPA
GPPGPTGLPGPIGPAGVPGQPGAKGARGERGAQGEAAITSQSSSGSYSEREKLSKTETFS
QISGPPGPPGPPGPPGPPIPGPPGPRGDPGIGHPGPPGPKGEPGTFIPNSGSYFSGPPGP
PGPKGSQGDQGPRGYPGDPGQPGLPGSPGISGEPGPLGPPGAPGPIGPQGPEGPKGDRGD
AGVPGAPGIPGSTVSRGGSSRVYQGPPGPPGPPGPPGPPGAGGDAVQSLPDIRQYISDYL
QSDAVRSYMIGPQGPPGLPGPPGPPGLGGPAVQSLDEVANRVITYVQNAGFVAGPPGPPG
PPGAPGFASMEDILAMLQREEVRQYLTGSSGRSAASWSSATEMHDLATRVIDIMSTRGLR
IGLPGPPGPPGPPGLPGSTYGDISALLQNSEFRGIVGPPGPPGLQGRQGPPGPPGPSGFV
TYSGTSGLSRTSETSDSSYRVEDIRSYLQNVGFSGPPGPPGPPGPPGIPGLSGGLVSYAE
NTQRDRFQTELIEYLTSDNVRRYISGPPGPPGPRGHKGERGESGYILDGRQSGKLDYASL
ALQLKDYMKSQGLISEYSHSVSERVIQQGPPGPPGPPGPPGYSRVIGAYGNVTTDLMEFF
RTYGTIQGPPGQKGDRGYPGLKGDRGDVGLPGPPGMQGLKGEKGEQVFVGRRKKRSTGV
NT seq
4500 nt
NT seq
+upstream
nt +downstream
nt
atggacgttttaaacaccaaaaagagtaaaaattcttccagaagccaggaaggacaaaca
aaagttctcactgaaacagtcaccaccactaccagactaacaacacgaccacctaagggc
tctagcagcagtataagcggtggccagagaggttcaacatccaacagcgcggggctggga
atggaaaagaaagtcctgtcacagggcaccagcagctatgtgtcatcaacaactgggggg
ggcaactcaaaagtgaatttcagctcaacaggctcacgaaggggccaaggctccagctcc
tccttgacatactccccagtctccactctggagaggaaggtcatcattagtcgcaatggt
ggatatgaaggaagttcaagtggaaattcatccccagaatacaccagaaaagaatttatc
acaacctcatcaacttcagccacaagagggagaagtcagagcagagaaagtgaaatcaga
gctcggctgcagagcgcgtcaccctctacaagatggacagagctagatgatgtcaaaaga
cttctgaagggaggtcgttcagccagtgtgagcccaacaagatccccctcaaacacactt
cccattcccaaaaaagccagtgtggaaaccaagacggtgatggagagctcacactcagtt
tcagccttcaatgagccacccagcatggggcgagattacacctcctacatgtactcaacc
ctccctgcaggctcgtcaatggtcaacggatacagctattttaacaacacaactaatctg
tcgcctggctcttctctgctcaacaccacctccccttcctccttgtcagttcacggtctg
cctaacaatctgaccttgaattcagctccaatgaccagcaccctcagcaccagctccacc
gtgtatggagtacagaataacctgggaacaaactccgccagcggcaactcaaatgtccct
caaagccccacaggctacggagttcagaaaaacatggcttacatggcacagtcccctacc
ttggccagcactggagtatccaccaccactgtcacccaaaccagggatcttaatgatgac
gtcttccgaaaagactacaagtttgtgctgctggaaaaagagaatgcaccggccaagaaa
gacactgagctgctaatcatggccaaggacagtggcaaactcttcacgaccgccaccacc
aatggcgttggcagctccttttctgatgacactttgaagaaggaaaagatgattgtgtca
agctccacggacgccgcagtgaaaagtgaagccaatgctggctttggctcctataaagtc
tccaccaaggacaaagcaacatatgcagaaattcgaaaagacgatgattatggtggtggc
ggcggagggggaggaggaggttgctgtggccgctgtagctggtggaagtggcttttggga
ttgcttctaggactgctcctgctccttgggttactatttggtttaattgctctagctgaa
gaagtcaataaattgaagaatcgtgtggcaaagcttgaaagtgacactatacgctccagc
cgtgtggtttctacagatataaacggccaaaatcctatcttagaaagatcaatatcaggc
gtcaacttggcagtcggggaaagtgacagtaacattcggttgcttgtgaaagaaacattg
aaagcggaacttcagtcagacagcataaaagcctacgtcaaaggtgaaaaaggtgattcg
ggacctaaaggtgatactggatcacaaggccctaaaggtgacatcgggaatgtgggacca
ccaggtcttccaggaataccaggtcatgctggaccagaagggcctaaagggcaaaaaggc
agccaaggggaccatggagccgagggccagatgggacttaggggacgagacggccagcct
ggacctcgtggtgaaccaggccctcctggcttcggtgaaaagggagaaaaaggcagccca
ggagattctggaccaccaggtgttactggattgcctggtccaatgggaattaaaggtgca
atgggcttgcaaggtcctccaggtcctattggttctcctggtccacaaggtttcagaggt
gaaacagggcaacctggtcctaaaggtgataaaggaattgttggctcagctggatcaaag
ggtgaccagggtgagaagggtccacgtggacctccaggtgagcctggccttcgtggactc
ccagggcctgcaggagaggctggagctaaaggatctgcaggccctccaggtgctgatggg
cttaaaggttcaagaggtgagccaggaccaatgggcttaacaggaatcagagggccatct
ggtccaccaggagatgctggtcagccagggcttccaggactacagggaccaccaggtctc
ccaggcaatccaggtgcacccggctctaaaggtgaccacggtgagccaggcagaatcatc
aatgcagaaggatcaaaggctgtggctttacccggaccacctggtccacctggccctgct
ggcccaccaggacccactggacttccaggtccaattggcccagctggagttcctggtcag
ccaggagccaagggcgcacgtggagagaggggtgcgcaaggcgaggcggctatcacatcc
cagagttcatcaggctcctattctgagagagaaaaattgtccaaaacagaaacattttca
caaatctctggcccaccaggaccccctggaccaccaggaccaccaggtccacccattcca
ggcccacccggcccaagaggtgatccaggtattggccaccctggtccacctggtccaaag
ggagaaccagggaccttcattccaaattcaggatcatacttttctggaccaccaggacca
ccaggacctaaaggatctcagggtgatcaaggaccaaggggatacccaggtgacccagga
cagccaggcctacctggaagtccaggaatctctggggagccaggtccacttgggcctcct
ggagctccaggaccaattggccctcagggaccagaaggaccaaagggagacagaggagat
gctggagttccaggggctccaggtattccaggatcaacagtgtcacgaggcggaagctca
agagtctatcaaggaccacccggaccaccaggacctcctggacctccaggacctcctggg
gcaggtggtgatgcagtccagtctttgcctgacatacgccagtacatttctgactatctt
caaagtgatgctgtccggagctatatgattggaccacaaggcccaccaggccttccaggg
cctcccggaccaccaggacttggtggacctgctgtacagtcattggatgaagtggcgaat
cgtgtgatcacctatgtgcaaaatgctggctttgttgcaggcccaccaggtcctcctggt
ccacctggggcccctggatttgcttcaatggaagacatattagccatgctgcagagggag
gaagtgagacaataccttacgggctcatctggacgttcagcagcgagttggtctagtgca
actgaaatgcacgatttggccactcgtgtcatcgacatcatgagcaccaggggtctgaga
attggcctaccaggacctccaggaccccctggacctccaggattgccagggtcgacttat
ggagatatatcagcactgctacaaaactcagaatttcgaggaattgttggtccccctggt
cctccgggactacaaggaagacagggtccacctgggcccccaggtccatctgggtttgtc
acatatagtggtacaagtggcctaagtcgtacaagtgaaacaagtgattcaagctacagg
gtagaagacatcagaagctacctgcagaatgtaggtttcagtggtcctcctggtccccct
ggcccaccaggtccccctggcatacctggattatctggaggactagtctcatatgcagag
aatacacagagggatcgcttccaaactgaacttattgagtaccttaccagtgacaatgtg
agaagatacatctcggggccgccaggtcctccaggaccccgtgggcataagggtgagcgt
ggtgaatctggctacatactggatggcaggcaaagtggaaagttggactacgccagccta
gcacttcagctgaaagactacatgaagagccaaggtctgataagtgagtattctcacagt
gtgtctgaaagagtcatccagcaaggacctcctggtccccccggccctccaggtcctccg
ggatacagccgagttatcggagcatatggcaatgtgactacagaccttatggaattcttc
agaacttatggaactattcaaggaccacctggccaaaaaggagaccggggttacccagga
ctcaaaggggacaggggtgatgtgggactcccaggtccaccaggaatgcaaggtctgaaa
ggagagaaaggagaacaagtatttgttggtcggaggaagaaaagaagcactggagtctaa
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