Polypterus senegalus (gray bichir): 120514284
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Entry
120514284 CDS
T08668
Symbol
rbm39a
Name
(RefSeq) RNA-binding protein 39a isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psex03041
]
120514284 (rbm39a)
Spliceosome [BR:
psex03041
]
Common components
Common spliceosomal components
General mRNP proteins
120514284 (rbm39a)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_5
RBD_DEAH11
RRM_7
Motif
Other DBs
NCBI-GeneID:
120514284
NCBI-ProteinID:
XP_039590526
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All DBs
Position
14:9548098..9596244
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AA seq
539 aa
AA seq
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MADDFDIEAMLEAPYKKDENKPSNANGHEERSKKKKRSRSKSRSKSRDRRKSRSRERKRS
RERKRSRSRERKRSRSRERRRSRSRSRERLGRYRSRRSPFSGPKINGGPRGKIGPPPAIK
ISRRRSRSRSPFRKDKSPIRESIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKV
RDVRMISDRNSRRSKGIAYIEFVEASSVPLAIGLTGQRLLGVPIIVQASQAEKNRAAAMA
NNLQKGNAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFS
DAECAKKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDSDELERTGIDLGTTGRLQL
MARLAEGTGLQIPPAAQQALQMSGSIPFGAMAAVTDLQARLTQPVEAAVNPALSLGLNLN
PSVTLPTQPIATQCFQLSNMFNPQAEDDPGWDVEIQDDVIEECNKHGGVVHIYVDKNSTQ
GNVYVKCPTIAAAMAAVNGLHGRWFAGKMITAAYVPLTTYHNLFPDSVMATTLLMPARR
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgattttgatattgaagccatgcttgaggcaccctataaaaaggacgagaac
aagccaagtaatgccaatggacacgaggagcgcagtaagaagaaaaagaggagcaggagc
aagagccgcagcaaaagtagagacaggaggaagagtagaagccgagaacgcaagaggagc
cgggaacggaagcggagccgtagccgtgagaggaagcggagccggagcagagaacgccgt
cgtagccgttctcggagcagagagagacttggtcgatacagatcacgaaggagtccattc
tccgggccaaaaattaatggtggacccagagggaagattggcccacctcctgccatcaaa
ataagcagaaggcgctccagaagcagaagtccatttagaaaagacaaaagcccaataaga
gagtcgattgacaatttgacgcctgaagaaagagatgctcgtactgtgttttgtatgcag
ctagcagcaagaattaggccaagggatcttgaagagttcttttctgcagttggaaaggtg
cgtgatgttagaatgatttcagaccggaactcgagaagatcaaagggcattgcatacatt
gagtttgtggaagcaagctctgtacccttggcaattggtcttactggtcagaggttgcta
ggagtaccaattattgtgcaggcatcacaggctgagaaaaaccgagcagctgctatggct
aataacctacaaaaaggcaatgccggaccaatgaggctctatgtcggctctctgcatttt
aatatcacagaggatatgcttcgtggaatatttgaaccttttggaaggattgaaagtatt
cagcttatgatggacagtgaaacggggaggtccaaaggatatggttttattacattctct
gatgctgaatgtgctaaaaaggctttggagcagcttaatggatttgagttggctggcaga
cctatgaaagttggacacgtaacagaacgcactgatgcctccactgccagttcatttttg
gacagtgatgagctagagaggactgggattgaccttggaactaccggtcgtctccagtta
atggccagactggctgaaggtactggcttacagattcctccagcagcccagcaagcatta
cagatgagtggatccattccatttggtgctatggcagctgtaacagatttgcaagcaaga
ctaacacagccagttgaagctgcagtgaatcctgccttgagtcttggcctgaacttgaac
ccatctgtcaccttgccaacacagccaattgcaacacagtgctttcagttatccaatatg
ttcaacccccaagcagaggatgacccaggctgggatgttgagattcaagatgatgttatt
gaagaatgcaataaacatggtggtgttgtccatatttatgttgacaaaaattcaacacag
ggcaatgtgtacgtgaagtgtcctacgatagctgcagcaatggctgctgtgaatggatta
catggaaggtggtttgcaggcaaaatgatcacagctgcatatgttcccttgaccacatac
cacaatctgttccctgattcagtaatggccactacgctgttaatgccagcacgccgatga
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