Polypterus senegalus (gray bichir): 120514336
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Entry
120514336 CDS
T08668
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psex03009
]
120514336 (pdcd11)
Ribosome biogenesis [BR:
psex03009
]
Eukaryotic type
90S particles
Other 90S particles
120514336 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
OB_RRP5_4th
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
OB_RRP5
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
TPR_12
ARM_TT21_5th
TPR_16
ARM_TT21
ANAPC3
TPR_15
TPR_2
TPR_8
TPR_CcmH_CycH
TPR_10
ARM_TT21_4th
Motif
Other DBs
NCBI-GeneID:
120514336
NCBI-ProteinID:
XP_039590594
LinkDB
All DBs
Position
1:complement(297699491..297778250)
Genome browser
AA seq
1823 aa
AA seq
DB search
MTSADEDFPRGGTFTNTTKLKGTKRPFEQDNLFEPYDSNEKKKKKDNSYENKKIAQKDKE
VGASKLNDSKTVDILYFKNLVEGMLIMGCIKEVGDFELMVSLPCGLNGFVSVTNISDSYT
KFLSDHVNTEEVMEEVLTLSHLFSPGMILRCTISSLGKTADGHNSIKLSINPKDVNKGLS
SDCLTPGMVLSGSVASIEDHGFLIDIGIPGSKAFLPKQKAFDYLKEIGKGNLKVGQYLNC
IIEEVKNEGRILRLSVSQSAISKAVALEKHGWTLSSLLPGLVVNAEIDKVSQNGLTVKFF
SSFTGTVDFLHLDSETAGYNKGQQVKACILYIQPTSRAIGMSLRPYVLKPGTTIEPVTSE
RIGEVFKDCTIKKLYRNNGASLVLPDKTVVFAHRHHLMEFGGPLKPNKVMPGTKHACRIL
DYAPMDQMLLVSLKRKIVTASFLRYKDIKPGEIIEGKVSSLQDYGMWVSITPYIRGLVPR
THLADIILKNPSKKYSPGDEVRCRVLDVNPVIKRMILTLKKTLVKSTFPIIDHYENAEPG
MITHGVIVCIKNFGCIVCLYNNVKGLVPRNELSTEVVPNPEEMFYTGQVVKVKVLKCNPE
EKKLLLSFKAASSGVSTNKMDVKKQTQTEEFDCNVGKIVEVEVLNKSENGLNVTILPQKI
PAFLPLAHLSDHVTNCNILWEVLQVGDIISNVMCLNKSSQQIILSKKTLIKNSVEENDLP
KDISDLHLGMLLIGFVRNIKPYGVFVEFPFGLIGLAPKSALSDKFVTDTSDFFQTGQTVV
AKVTEIDVEKRRFLVNLQISQCTGEDDQNESLKLLFQCLKERSSVVDILNKRGDPTLDSV
LLLSVGKKIEMVFEEESSDGTAYFKCSKVPGATVKAVKYHMQGVNVVPGQKVKPVVLHVD
LLTSEVHVSLRNELLNCPVKELMLNSKHLATVQHVEKDFAIVSLEENGQLAAMPVTAHLN
DCFRFQSESLTLGQTLNVSVKQLSKKSTGGLILVLREPDKFKNTTRVRKTSITKEVLPTG
PKHSLNLGDVVVGTVKSIKPTSVLVTLENGITGRIHASEISESVTPGSFPSSLLKVGQKV
TARVIGGRDCVTNRHLPITHPHFTFTMPELTVLPSKINSELKPEDIPVIDDVKTFEVGTE
VVCFVIKYNSYSRCLHVEITGKVWGTAELLLMSLSPKDLKHPEKLFKLGQAIKATVVTSI
SGDRRLSVSVNGVKSLAEGTVTLATVSTINPNVGLILSLPFGKTGYVGLTDISDSYMSDP
LKQFSLGQIVRCCVLGEENKKIRLSMRLSKVFPGNQSKIRDAEILSVANLNEGQIVRGFI
KSISDKGIFVSLSRTVTGRVKFKYSTCYFLKDHTDYAKNIPLGMLVSAMVLEVDVKENKV
ELSILQKDTGEPDIFPPSLGFPLREPVKDKEKGEAFKKRKRKLEKQISDTKQTEQKKKGQ
QQLSEENDSGVEVFFREPIDDDDDDERKENLSHMSKTLKENGQPRLQVSGGFSWDVTLDT
LQTFKMVQTEHSSEGEEETDHKPQKKTKRQMNQDKQLQEMELAKVERELMDPNRQPKCAN
DFDRLVLSSPDSSIVWLQYMAFHLHATEIEQARAVAERALKTISFREEQEKMNVWVALLN
LENLYGTEESLNKVFERAVQYCEPLKVFQQLADIYIKSEKYEKAEMLYNTMLKRFRQEKS
VWLNYAMFHFKQGQTNAAQRLLQRALKCLLNKDHIDTIVKFAQLEFRYGDAERARSMFES
TLSNYPKRSDLWSVYIDMMIKHGSQEEVRAICERVIHMSLPAKKIKFFFKRYLEYEKKHG
TAESVEAVKQKAMDYVEGKSTVP
NT seq
5472 nt
NT seq
+upstream
nt +downstream
nt
atgacatcagcagatgaagattttccacgtggtggaacatttacgaacactactaaactc
aaaggaactaaacgaccttttgaacaagacaatctatttgagccctatgattctaatgag
aaaaagaagaaaaaggacaacagttatgaaaataaaaagattgcacaaaaagacaaagaa
gttggtgcatctaaacttaatgattcaaaaactgtggatattctttatttcaagaatctt
gttgaaggaatgttaataatgggttgcattaaagaagtaggtgactttgagctgatggtg
agcttgccatgtggacttaatggctttgtttccgtgactaacatctctgactcctacacc
aaattcctttctgatcatgtgaacacagaagaagtcatggaggaggtgttaacactttcc
cacctgtttagtcctgggatgattttaaggtgtacgatatccagtcttggaaagacagca
gatggccacaacagtattaaactttccattaacccaaaggatgtcaataaaggtctcagt
tctgactgcctcacaccaggcatggttctttctggttctgtggctagtattgaagaccac
ggtttcctgattgatattgggattcctggatcaaaggcttttttacccaagcaaaaagct
tttgactatcttaaagaaattggcaaaggtaatttaaaagtgggccagtatctgaactgt
ataatagaagaagtaaagaatgaaggccgcattcttcgtttatcagtcagtcaatctgca
atctccaaggcagtagctctggaaaagcatggctggacactaagtagtttgcttcctggg
ctggttgttaacgctgaaattgataaggtgtcccaaaatggactcacagtgaaattcttt
tcttcttttactggtactgttgactttttgcacttggactctgagacagctggttataac
aaagggcagcaggtgaaagcttgcattctgtatattcagcctacatctcgtgcaataggg
atgagtctgcgtccttacgtccttaagcctggcacaacaatcgaacctgtaacaagtgaa
cgtattggagaggtgtttaaggactgcactattaagaaattatatcgtaataatggtgcc
tctttagtgcttccagacaaaactgtagtctttgcacaccgacatcatctcatggagttt
ggtgggccgttaaaacccaataaagtaatgccaggaaccaaacatgcttgcagaatttta
gattatgctcctatggatcagatgctcttagtaagtctgaagcggaaaatagttactgca
tcattcctgagatacaaagatattaagccaggagaaattattgagggaaaagtctcttca
ttgcaagattatgggatgtgggtaagcataaccccatatatccgaggacttgtccctcga
acacatctggctgacattattttaaagaatccaagcaagaaatatagtccaggagatgag
gttcgctgccgggttcttgatgtgaatcctgtcatcaaaagaatgattctaacactgaag
aaaacattagtgaaatccacatttcccattatcgatcactatgagaatgcagagcctggc
atgatcacccatggggttatagtgtgcatcaaaaactttggctgtattgtgtgcctttac
aataatgttaaaggacttgttccaagaaatgagttgagtacagaggtggttcctaaccca
gaggagatgttctatacgggacaggttgtcaaagtaaaagttttaaaatgtaatccagag
gaaaagaagctgcttttatctttcaaagctgctagcagtggtgtttccacaaataaaatg
gatgtgaagaagcagacacaaacagaagagtttgattgcaatgttggaaagatcgttgaa
gtggaagttctgaacaagagtgaaaatggtctgaatgtaacaattctacctcagaaaata
ccagcttttctacctttggctcatctttctgaccatgttaccaattgtaacatcctttgg
gaagtgctgcaagtgggggatattatctccaatgttatgtgcctcaacaaaagcagtcaa
caaattattttgagcaaaaaaacattaatcaagaactcggtggaggagaatgatttgcca
aaagatatttctgacctccatttaggaatgttactcattggattcgtcaggaatataaaa
ccatatggagtatttgtagagtttccttttggactcataggacttgctcctaaatcagct
ttgtcagacaaattcgtaacggacaccagtgatttctttcaaacaggccaaacagttgtg
gcaaaagttaccgaaatagatgtagaaaaaaggcgtttcttagtaaacctacagatatca
cagtgtactggagaggacgaccagaatgagagtttgaagttgctttttcagtgcttaaaa
gagagaagtagtgtggtagatattctgaacaaaagaggtgatccaacattagacagtgtt
ctcctactttctgtgggcaaaaaaatagaaatggtttttgaagaagagagcagtgatggc
acagcatactttaaatgtagcaaagttcctggggcaacagtcaaagccgtgaagtatcac
atgcaaggtgtaaatgttgttccagggcagaaggttaaacctgtggtgctgcatgttgat
cttttgacttcagaagttcatgtttctcttagaaatgagttgttgaactgtcctgtcaaa
gagttgatgttgaactccaaacatttggcaacagtgcagcatgtggagaaggactttgcc
attgtttccttggaagaaaatggacaactagctgcgatgccagtgacagctcatttgaat
gactgttttagatttcaatctgagtctttgactttgggccagacattgaatgtgtctgtg
aagcaattaagcaaaaagtccactggcgggctgatactagttttgagagaacctgataag
ttcaagaacactacaagagtccgtaaaacatccatcacgaaggaggttttgccaactggt
cccaaacattctttgaatttaggagatgtagttgttggcacagtgaagtccatcaaacct
acttctgttttagtaacattagaaaatggcatcacaggcagaatacatgcatcagagata
tcagaaagtgtaactcctggttcttttccatcttctttgcttaaagtagggcagaaagtc
actgcacgagtaattgggggacgagattgtgtaactaataggcatttaccaatcacacac
ccgcattttactttcacaatgccagaattgactgttctacccagcaagattaacagtgaa
ctgaaacctgaagatattcctgtcattgatgatgttaaaacctttgaggtcggcactgaa
gttgtttgttttgtgataaagtacaacagctattccagatgccttcatgttgaaattact
ggaaaagtttggggaactgctgagttgttattgatgtccttgtcacccaaggatttaaag
caccctgagaagcttttcaagcttggccaggcaataaaagctacagtggtcactagtatc
tcgggagatcggcgtctttctgtgtcagttaatggagtgaaaagccttgctgaaggtact
gtgacattagcaactgtgagtacaatcaatccaaatgttggcctcatcctttcacttcca
tttggcaagactggttatgtggggcttacagacataagtgattcctatatgtctgatcct
ttgaagcagttttctctaggccaaatagtccgatgttgtgttttaggtgaagaaaataag
aaaatacgtttatccatgagactatctaaggtatttcctggaaaccagtcgaaaattaga
gatgcagaaattttgtctgtggcaaatctaaacgaaggtcagattgttcgtggctttata
aaatccatttcagataaaggaatctttgtcagtctttctagaactgtcacaggcagagtt
aaattcaagtattctacgtgctactttctgaaggatcatacagattatgcaaagaacatt
ccccttggtatgctggtttctgcaatggttttagaagtagatgtgaaggaaaataaggtt
gaattgtccattctgcaaaaggacactggagaaccagatatattccctccatctctaggg
tttcctcttcgagagccggtaaaggataaagagaaaggcgaagctttcaagaaacgaaag
cgaaaactagagaaacaaatttcagacaccaaacagactgagcagaaaaagaaagggcag
cagcagctctctgaagaaaatgacagtggggttgaggttttcttccgtgaacctattgac
gacgacgacgatgatgaaaggaaggagaatttgagccatatgtctaagacattaaaagaa
aatgggcaaccccgactccaggtttcaggtggtttctcctgggatgtgactttagacacc
ctccagacatttaagatggtccaaacggagcattcttctgaaggtgaagaggagaccgat
cataagcctcaaaagaaaaccaaacggcaaatgaaccaagacaagcagttacaagaaatg
gagttagcaaaggtggaaagagaattaatggatcccaatcggcaacctaaatgtgccaat
gactttgatcggctagtgcttagctcaccagacagctctattgtgtggttacagtacatg
gcatttcatctgcatgctacagaaattgagcaagcccgtgctgtcgctgaaagagccctc
aaaactatctctttcagagaagaacaagagaagatgaatgtgtgggtggctctgctaaac
ctagagaatctgtatgggactgaggagagcctgaataaggtgtttgaacgagccgtgcag
tactgtgaacctcttaaggtgtttcaacagcttgcagacatctacatcaaatcggagaaa
tatgagaaagctgagatgctatacaacaccatgctgaagcggtttcgacaggaaaagtca
gtctggctgaattatgccatgttccatttcaaacagggacagactaatgctgcccagcga
cttctccagagagcattaaaatgtctgcttaacaaggatcatattgatacaattgtgaag
tttgcacaactggagtttcgatacggcgatgcagagcgtgccagatctatgtttgagagc
accctgagtaattatcctaagcgatcagatttgtggtccgtctatattgacatgatgatt
aagcatggaagccaggaagaagtccgtgccatttgtgagcgtgtgatccacatgagtctc
cccgctaagaaaattaagtttttcttcaaacgctacctggagtatgaaaagaagcacggc
acagcagagagtgtcgaggccgtgaagcagaaggcaatggattacgtcgaaggaaagagt
actgtgccgtaa
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