Polypterus senegalus (gray bichir): 120514352
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Entry
120514352 CDS
T08668
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120514352 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psex03021
]
120514352 (taf5)
03036 Chromosome and associated proteins [BR:
psex03036
]
120514352 (taf5)
Transcription machinery [BR:
psex03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120514352 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
120514352 (taf5)
Chromosome and associated proteins [BR:
psex03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
120514352 (taf5)
STAGA complex
120514352 (taf5)
TFTC complex
120514352 (taf5)
SAGA complex
120514352 (taf5)
SLIK complex
120514352 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
NBCH_WD40
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_HPS5
VPS8_N
Beta-prop_Nup120_160
WD_LRWD1
PEP5_VPS11_N
LisH_TPL
Beta-prop_WDR11_2nd
RAB3GAP2_N
Motif
Other DBs
NCBI-GeneID:
120514352
NCBI-ProteinID:
XP_039590607
LinkDB
All DBs
Position
1:complement(297789165..297812533)
Genome browser
AA seq
756 aa
AA seq
DB search
MAAIPDGPVKSETELEVKPDSVNDIAGNPNVVQGIGGTPKTSPSVAATVASVTPPDITDR
QTLLAVLQFLKKNKLLESEETLRKESGLCLDNEEQSGSVDGGSVCATGDAEGSDASLLSR
VSGVTSAPAAAAVTGAPVPAKVTSATSAGDDQPDVSVVLSAYSQQGDPALYQVYYSGLKK
FIESVLDCHRAELSQVFYPLFVHMYLELVYNQHEAEAKDFFDKFHGDQECYYQDDLRVLS
GLTKKEHMKGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFD
GMPRSKSQIDSMSGSLAGEARREANKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKK
KPKKDSLGSKSKKQDPNAPQQNRIPLPELKDSDKLDKIMNMKEATKRIRLGPDSLPSICF
YTFLNAYQGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRGVKSAADLSLIDKESDDV
LERIMDEKTASESKILYGHSGPVYGTSFSPDRNYLLSCSEDGTVRLWSLQTFTCLVGYKG
HNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRMFSGHLADVTSTRFHPNCNYVV
TGSADRTIRLWDVLTGNCVRILTGHKGPIHSLAFSPNGKFLASGATDGRILLWDIGHGVM
IGELKGHTDTIYALKFSRDGEILASGSMDNTVKLWDATKAFDDIETDDFTAATGHITLPE
NSQDILLGTYVTKSTAVVHVHFTRRNLLLAAGSYNP
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggcggctattccagatgggccggtcaagtcagagactgagttagaagtaaaaccggac
agcgttaacgatatcgccggtaatcctaatgtcgtgcaaggaatcggaggaacacccaag
actagcccctctgttgcggctactgttgcctctgttacacctccggacattacagaccga
cagaccttgctggcggtgctgcagttccttaagaaaaacaaactacttgagtccgaagag
acgctgcgaaaagagtctggtttgtgtttagataacgaggagcaatcaggatcggtagat
ggcgggtctgtatgtgctactggggacgcagagggcagcgatgcttcccttttaagtcgc
gtctctggggtaacgagcgcgcctgcagctgcggctgtcactggtgcgccggtacctgca
aaagtgacctctgcaacctctgcaggagatgaccagccagatgtaagtgtggtgctgtca
gcatatagccaacagggggaccctgctctctaccaagtgtattacagtgggctgaaaaag
tttattgagtcagttttggactgtcacagagctgagctttctcaggtcttctatccactc
tttgtccacatgtacctggaactggtctataatcagcatgaggcagaagccaaggacttc
tttgataagtttcatggagatcaggaatgctactaccaagatgacttgcgtgtattatct
ggattaactaaaaaggagcatatgaaaggaaatgaaacacttcttgacttcaggactagc
aagtttgtcctgcgaatttctagagactcttaccagcttctcaagaggcatctccaggag
agacagaacaatcagatttggaatattatccaggagcatctctacattgatatttttgat
ggcatgccaagaagtaagagccaaattgatagtatgtctggtagtctggcaggtgaagcc
agacgagaggcaaacaaagcaaaagttttttatggactcttaaaagagccagaaattgaa
gtgccgctggatgatgaagatgaagaagctgaaaatgaagaaggaaagccaaaaaagaaa
aagcccaaaaaggatagcctgggttccaagagtaaaaaacaagacccgaatgctccacag
caaaatagaattcccctaccagaacttaaagattctgacaagctcgacaaaataatgaac
atgaaagaagcaaccaaaagaatccgacttggtccagacagtctgccctcaatttgcttc
tacacctttctgaatgcataccagggattaacagcagttgacttcactgatgattctagt
ttgatcgctggaggtttcgctgattccactgtccgtgtatggagtgttacaccaaagaag
cttaggggtgtgaaatctgcagccgatctcagtttgattgataaagagtctgatgatgta
ttggaaaggataatggatgaaaaaactgcaagtgaatcaaaaattctttatggccatagt
ggaccagtatatgggacaagttttagtcctgatagaaactatcttttgtcatgctcagag
gatggcactgtaagactatggagtctgcagaccttcacgtgccttgtggggtacaaaggc
cacaactatcctgtgtgggacacacagttctcaccatatggatactactttgtttctgga
gggcatgaccgagtagctcgcctttgggcaacagatcattatcagcctttgaggatgttt
tctggccacttagcggacgtaaccagcactcgtttccatccaaattgcaactacgtagtg
actggttcagctgatcgaaccattagactctgggatgtgctaactggtaactgtgttcgt
atcttgacaggacacaaaggcccaatccatagtctggcattttcaccaaatgggaaattt
ttagcatcaggagcaactgatggaagaattttgctgtgggatattgggcatggggtgatg
attggtgaacttaaaggtcatacggatactatatatgcacttaaattcagtagagatggc
gagattttggcatctggttcaatggataatactgtcaaattatgggatgccacaaaagcc
tttgatgacatagagactgacgactttactgcagcaaccggacatataaccttaccagaa
aactctcaggacatattattgggaacatatgtgacaaaatcgactgctgtcgtacatgtt
cattttacacgaagaaacttacttcttgctgcaggatcatataacccttag
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