KEGG   Polypterus senegalus (gray bichir): 120514352
Entry
120514352         CDS       T08668                                 
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
psex  Polypterus senegalus (gray bichir)
Pathway
psex03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:psex00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    120514352 (taf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psex03021]
    120514352 (taf5)
   03036 Chromosome and associated proteins [BR:psex03036]
    120514352 (taf5)
Transcription machinery [BR:psex03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     120514352 (taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     120514352 (taf5)
Chromosome and associated proteins [BR:psex03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     120514352 (taf5)
    STAGA complex
     120514352 (taf5)
    TFTC complex
     120514352 (taf5)
    SAGA complex
     120514352 (taf5)
    SLIK complex
     120514352 (taf5)
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_IFT122_1st WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 TFIID_NTD2 WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_EML Beta-prop_VPS8 WD40_MABP1-WDR62_1st Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_SCAP DSE1_N NBCH_WD40 ANAPC4_WD40 Beta-prop_Aladin Beta-prop_TEP1_C PAC11 WDR90_beta-prop_4th Beta-prop_WDR41 Beta-prop_RIG_2nd Beta-prop_IFT140_1st CFAP251_N Beta-prop_EIPR1 Beta-prop_Vps41 WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_SPT8 ASA1 Beta-prop_DCAF12 Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_Nup120_160 WD_LRWD1 Tricorn_2nd Beta-prop_NOL10_N DNAI3_WD PEP5_VPS11_N LisH_TPL Beta-prop_ACSF4 Beta-prop_WDR11_2nd RAB3GAP2_N
Other DBs
NCBI-GeneID: 120514352
NCBI-ProteinID: XP_039590607
LinkDB
Position
1:complement(297789165..297812533)
AA seq 756 aa
MAAIPDGPVKSETELEVKPDSVNDIAGNPNVVQGIGGTPKTSPSVAATVASVTPPDITDR
QTLLAVLQFLKKNKLLESEETLRKESGLCLDNEEQSGSVDGGSVCATGDAEGSDASLLSR
VSGVTSAPAAAAVTGAPVPAKVTSATSAGDDQPDVSVVLSAYSQQGDPALYQVYYSGLKK
FIESVLDCHRAELSQVFYPLFVHMYLELVYNQHEAEAKDFFDKFHGDQECYYQDDLRVLS
GLTKKEHMKGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFD
GMPRSKSQIDSMSGSLAGEARREANKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKK
KPKKDSLGSKSKKQDPNAPQQNRIPLPELKDSDKLDKIMNMKEATKRIRLGPDSLPSICF
YTFLNAYQGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRGVKSAADLSLIDKESDDV
LERIMDEKTASESKILYGHSGPVYGTSFSPDRNYLLSCSEDGTVRLWSLQTFTCLVGYKG
HNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRMFSGHLADVTSTRFHPNCNYVV
TGSADRTIRLWDVLTGNCVRILTGHKGPIHSLAFSPNGKFLASGATDGRILLWDIGHGVM
IGELKGHTDTIYALKFSRDGEILASGSMDNTVKLWDATKAFDDIETDDFTAATGHITLPE
NSQDILLGTYVTKSTAVVHVHFTRRNLLLAAGSYNP
NT seq 2271 nt   +upstreamnt  +downstreamnt
atggcggctattccagatgggccggtcaagtcagagactgagttagaagtaaaaccggac
agcgttaacgatatcgccggtaatcctaatgtcgtgcaaggaatcggaggaacacccaag
actagcccctctgttgcggctactgttgcctctgttacacctccggacattacagaccga
cagaccttgctggcggtgctgcagttccttaagaaaaacaaactacttgagtccgaagag
acgctgcgaaaagagtctggtttgtgtttagataacgaggagcaatcaggatcggtagat
ggcgggtctgtatgtgctactggggacgcagagggcagcgatgcttcccttttaagtcgc
gtctctggggtaacgagcgcgcctgcagctgcggctgtcactggtgcgccggtacctgca
aaagtgacctctgcaacctctgcaggagatgaccagccagatgtaagtgtggtgctgtca
gcatatagccaacagggggaccctgctctctaccaagtgtattacagtgggctgaaaaag
tttattgagtcagttttggactgtcacagagctgagctttctcaggtcttctatccactc
tttgtccacatgtacctggaactggtctataatcagcatgaggcagaagccaaggacttc
tttgataagtttcatggagatcaggaatgctactaccaagatgacttgcgtgtattatct
ggattaactaaaaaggagcatatgaaaggaaatgaaacacttcttgacttcaggactagc
aagtttgtcctgcgaatttctagagactcttaccagcttctcaagaggcatctccaggag
agacagaacaatcagatttggaatattatccaggagcatctctacattgatatttttgat
ggcatgccaagaagtaagagccaaattgatagtatgtctggtagtctggcaggtgaagcc
agacgagaggcaaacaaagcaaaagttttttatggactcttaaaagagccagaaattgaa
gtgccgctggatgatgaagatgaagaagctgaaaatgaagaaggaaagccaaaaaagaaa
aagcccaaaaaggatagcctgggttccaagagtaaaaaacaagacccgaatgctccacag
caaaatagaattcccctaccagaacttaaagattctgacaagctcgacaaaataatgaac
atgaaagaagcaaccaaaagaatccgacttggtccagacagtctgccctcaatttgcttc
tacacctttctgaatgcataccagggattaacagcagttgacttcactgatgattctagt
ttgatcgctggaggtttcgctgattccactgtccgtgtatggagtgttacaccaaagaag
cttaggggtgtgaaatctgcagccgatctcagtttgattgataaagagtctgatgatgta
ttggaaaggataatggatgaaaaaactgcaagtgaatcaaaaattctttatggccatagt
ggaccagtatatgggacaagttttagtcctgatagaaactatcttttgtcatgctcagag
gatggcactgtaagactatggagtctgcagaccttcacgtgccttgtggggtacaaaggc
cacaactatcctgtgtgggacacacagttctcaccatatggatactactttgtttctgga
gggcatgaccgagtagctcgcctttgggcaacagatcattatcagcctttgaggatgttt
tctggccacttagcggacgtaaccagcactcgtttccatccaaattgcaactacgtagtg
actggttcagctgatcgaaccattagactctgggatgtgctaactggtaactgtgttcgt
atcttgacaggacacaaaggcccaatccatagtctggcattttcaccaaatgggaaattt
ttagcatcaggagcaactgatggaagaattttgctgtgggatattgggcatggggtgatg
attggtgaacttaaaggtcatacggatactatatatgcacttaaattcagtagagatggc
gagattttggcatctggttcaatggataatactgtcaaattatgggatgccacaaaagcc
tttgatgacatagagactgacgactttactgcagcaaccggacatataaccttaccagaa
aactctcaggacatattattgggaacatatgtgacaaaatcgactgctgtcgtacatgtt
cattttacacgaagaaacttacttcttgctgcaggatcatataacccttag

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