Polypterus senegalus (gray bichir): 120514436
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Entry
120514436 CDS
T08668
Symbol
poll
Name
(RefSeq) DNA polymerase lambda
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03410
Base excision repair
psex03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120514436 (poll)
03450 Non-homologous end-joining
120514436 (poll)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psex03400
]
120514436 (poll)
Enzymes [BR:
psex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
120514436 (poll)
DNA repair and recombination proteins [BR:
psex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
120514436 (poll)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
120514436 (poll)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_B_thumb
DNA_pol_lambd_f
HHH_8
BRCT
PTCB-BRCT
HHH_5
BRCT_2
NTP_transf_2
HHH_2
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
120514436
NCBI-ProteinID:
XP_039590754
LinkDB
All DBs
Position
1:complement(299209166..299301455)
Genome browser
AA seq
566 aa
AA seq
DB search
MEPRGIVKAFPKVKRRIREPQKEELNKKLKPETPISGWLRGVRAYIIQAGIGSARTTIFQ
NQILQNGGSIENTFCSNVTHVIVDESMDPDRALRLLKIEKLPSSVQVLKSSWLSLCITHK
RILDTAGYNLFTSDRYFDSNQPNNDTGCNSTTESNPDALKGNESKQMTETVCQKEPVENG
TILQYQLSDNEASDDEDEVVNHSDLQALIIGHSPLKESDSSITVPSVVGKWVCAQSSESK
KENYNKHITDKLEVLEKSYSHQGDKWRALGYAKAINALKSYSKSVTSYEEASQIQGIGKK
IAEKIREILESGHLRKLDHISDSVQVLELFSNIWGAGAKTAQMWYQQGFRTLGDIRMKAS
LTSQQTIGLKHYNDFLDRMTREEAGEIEKTVKDMALSLNPGLIAVACGSYRRGKATCGDV
DVLITHPDGISHKGIFSRVLHGLRQNGFLTDDLVSHEEKGNQKKYLGVCRLPGPERKHRR
LDIIVVPYSEFACALMYFTGSAHFNRSMRALAKTKGMSLSEHSLNNNVVRKGNLKISTGF
PLPTLTEKDIFDHLELPYREPHERDW
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggagccacgaggaattgtgaaagctttccctaaagtgaagagaagaattcgagagcct
caaaaagaagagctgaacaaaaaactaaaaccagagactccaatatcaggttggctcaga
ggagtaagagcatacatcatccaggcaggaattggcagtgccaggacaacaatctttcag
aatcagatactccagaatggtggtagcattgaaaacacattctgctcaaatgttactcac
gtgatagttgatgaatcaatggatccagatcgtgctttgcggttattaaaaattgagaag
ctaccttcttcagttcaagtattaaaatcgtcttggctgagcttgtgcatcactcataaa
agaattctagatactgcaggctacaatctcttcacgtcagacaggtatttcgattccaat
cagccaaataatgatacaggatgtaacagcacaactgagtctaatcccgatgcattgaaa
ggaaatgagagcaaacagatgaccgagaccgtctgtcaaaaagagccagtggaaaacggg
accattttacagtaccagctctctgacaatgaagcaagtgatgatgaggatgaagttgtg
aaccacagtgacctgcaagctcttattattggccactctccactcaaggaatcagactct
agtataacagttccctctgttgtgggaaaatgggtttgtgctcagtcttctgagtcaaag
aaagagaattataacaagcatattactgacaaactcgaggtactggaaaaatcctacagt
caccaaggggacaaatggagagcgctgggatatgccaaggccatcaatgctcttaaaagt
tattctaaatctgtcacttcatatgaggaagcatcccaaattcagggcattgggaaaaaa
atagcagaaaagataagagagattctggagagtggtcatcttcgcaaattagatcatata
tcagacagtgtgcaggtgctggaactcttttctaatatctggggggctggagccaaaact
gcacagatgtggtatcagcagggattcagaacacttggcgacatccgtatgaaagcttcc
cttacaagtcagcagacaattggcttgaaacactacaatgatttcttggatcgaatgaca
cgtgaagaggcaggagagatagaaaaaacggtgaaggacatggccttgtctctgaaccct
ggcttgattgctgtagcgtgtggctcatatcgaagaggaaaagcaacctgtggagatgtc
gatgtccttatcacacaccctgatgggatatcccacaaaggaatatttagtagagtctta
catggacttcggcaaaatggcttcctaacagatgatctggtcagccatgaggaaaaggga
aatcaaaagaaataccttggagtctgtcgtctcccaggacccgaacgtaaacacaggaga
cttgacatcattgtggtgccttacagtgaatttgcctgcgctttgatgtactttactggt
tcagcacacttcaaccgttctatgagggcactggccaagaccaaggggatgagcctttct
gaacactcccttaacaataatgttgtccgcaagggcaatctgaaaataagcactggcttc
ccactccccactctgactgagaaggatatttttgaccaccttgaactgccttacagagag
cctcatgaaagagactggtga
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