Polypterus senegalus (gray bichir): 120514454
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Entry
120514454 CDS
T08668
Symbol
prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120514454 (prpf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psex03041
]
120514454 (prpf6)
Spliceosome [BR:
psex03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120514454 (prpf6)
Complex C
U5 SnRNP specific factors
120514454 (prpf6)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
HAT_Syf1_CNRKL1_C
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_17
TPR_2
TPR_8
TPR_1
FAT
TPR_15
TPR_CcmH_CycH
ARM_TT21_2nd
TPR_9
Motif
Other DBs
NCBI-GeneID:
120514454
NCBI-ProteinID:
XP_039590778
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All DBs
Position
14:complement(48016675..48066752)
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AA seq
988 aa
AA seq
DB search
MASTTTTRMGTAGGTGPGGGPGGPGAGPGGALTSSLSGTGATSSLTGTLNKKKKPFLGMP
APLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQADDDDEDL
NDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKDRREQREKEEIEKYRM
ERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFAKHLQS
GENHTSVDPRQSQFGGLNSPFPGGLNTPYPGGMTPGLMTPGTGELDMRKIGQARNTLMDM
RLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWI
ASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKVVVAQAVRHLPQSV
RIYIRAAELETDIRAKKRVLRKALENISKSVRLWKAAVELEEPEDARIMLSRAVECCPTS
VELWLALARLETYENARRVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITS
LRANGVEINREQWIQDAEECDKAGSVATCQAIIRAVIGIGIEEEDCKHTWMEDAESCIAH
GAVECARAIYAHSLQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLM
GAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAP
TARVFMKSVKLEWVLGNIEAALDLCAEALRHYEDFPKLWMMRGQIEEQIENTDRAREAYN
QGLKKCPQSTPLWLLLSQLEEKAGQLTRARAILEKSRLKNQESPELWLESVRLEYRAGLK
NISNTLMARALQKCPNSGILWSEAIFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWS
ERKITKAREWFLRTVKIDPDLGDAWAFFYKFELQHGTEEQQEEVKKRCENAEPRHGELWC
AESKHVLNWQKKIGELLLIVASKLRNTF
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacaacaacaacgagaatgggtaccgctggaggtaccggccccggcggcggt
cccggtggacccggcgccggccccggcggggctcttacatcaagtctttctggcaccggg
gcaacttcaagcctcacaggcacgcttaataaaaagaagaaaccgtttcttggcatgcct
gcacccctaggatatgtgcctggtcttggtagaggtgcaactggtttcaccactcgttct
gatattggtcctgcccgtgatgcgaatgacccggtggatgaccgacatgcacctccaggg
aagagaactgttggtgaccagatgaagaagaatcaggccgatgatgacgatgaagacctt
aatgacaccaattacgatgagtttaatggctatgcaggtagtttgttttccagtggtcct
tatgaaaaagacgatgaagaagctgatgcaatttatgctgcacttgataaacgaatggac
gagaggagaaaagacagaagagagcaaagagaaaaggaagagatagagaaataccgtatg
gagcgaccaaagattcagcagcaattttctgacttgaaaagaaaacttgcagaggtaaca
gaagaagaatggctcagcattcctgaagttggagatgccagaaacaagcgtcagaggaac
cctcgctatgaaaaactaacacctgtaccagacagctttttcgctaaacatttacaatct
ggagaaaaccacacttcagttgatcccagacagtcgcaatttggtggacttaactctcct
ttccctggtggactgaatacaccttaccctggaggcatgactccaggactaatgacacca
ggtactggtgagctggatatgagaaaaattggtcaggcaagaaatacgttaatggacatg
cgacttagccaggtttctgattctgtcagtggacagacagttgttgaccccaaggggtac
ttgactgatctcaattcaatgatccctactcatggtggtgatattaacgatatcaaaaag
gctagactactgttaaaatcagtgcgagaaacaaaccctcatcacccacctgcttggatt
gcttctgcacgtctggaagaggtcactggcaaactgcaggttgcaagaaacttaataatg
aaaggcacagagatgtgtcctaagagtgaagacgtttggttggaagctgctaggctacag
cctggtgacacagctaaggttgtggtggcgcaagctgtccggcatttgcctcagtctgtt
cgaatctacattcgcgcagctgagctagagactgatatacgtgccaagaaacgtgtttta
agaaaagcacttgaaaatatttctaaatcagtacgtctctggaaagcagctgttgaattg
gaggagccagaagatgctaggattatgctgagcagagctgttgagtgttgtccaacaagt
gtggagctctggcttgcactcgccagacttgagacctatgaaaatgcgagaagagtacta
aacaaggcacgagaaaacattcccactgacagacatatctggattactgcagctaagcta
gaggaggccaatggcaacacccagatggtagaaaagattattgacagagccatcacttct
cttcgagctaatggagtagaaatcaacagagagcaatggattcaggatgcagaggaatgt
gataaagctggtagtgtggcaacctgtcaggctataattagagcagtcattggcatcgga
attgaagaggaagactgcaagcatacttggatggaagatgctgaaagttgcattgctcat
ggtgctgtggaatgtgcaagagctatatatgctcattctcttcaagtcttccctagcaag
aaaagtgtatggcttagagcagcatattttgaaaagaatcatggaaccagggagtcttta
gaagcgttgctacaaagagcagttgcacattgtccaaaagctgaggttctgtggcttatg
ggagcaaaatcaaagtggcttgctggagatgtacctgcagctagaagtattcttgctctt
gcatttcaggccaatccaaacagtgaggaaatttggttggctgctgtgaagctcgagtct
gagaacaacgaatatgaaagggctcgaagacttctggctaaagctagaagtagtgcacca
actgcaagggtgtttatgaagtctgtaaaattggaatgggttctgggtaatattgaagct
gccctggacctttgtgctgaagctttgagacattatgaagattttcccaaactatggatg
atgcgaggacaaattgaagagcaaattgaaaacactgacagagctcgagaagcatataac
caagggttgaagaaatgccctcagtccacacctctgtggctgttactgtctcaactggag
gagaaagcgggccagttaactagagccagagctattttggaaaaatcacgtctgaaaaac
caagaatctcccgagctatggcttgagtcagtaaggttggaatacagagctggcctcaaa
aacatttcaaataccctaatggctagggcacttcaaaaatgccccaactcaggaattctt
tggtctgaagctattttccttgaagctaggcctcaaagaaaaactaagagcgtggatgcc
ttgaagaaatgtgaacatgatccacatgttttgttggctgtagcaaagttattctggagt
gaacgcaaaataacgaaagccagggaatggttccttaggacagttaaaattgatcctgat
ctgggagatgcctgggcattcttctataaatttgaattgcaacatggaacagaggaacaa
caagaagaagtaaagaagcgctgtgaaaatgctgagccccggcatggagaattatggtgt
gcagagtccaagcatgtgctaaactggcagaagaagattggtgaacttttacttattgtt
gcttcaaaactaagaaataccttctaa
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