Polypterus senegalus (gray bichir): 120514502
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Entry
120514502 CDS
T08668
Symbol
ddx27
Name
(RefSeq) probable ATP-dependent RNA helicase DDX27
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psex03041
]
120514502 (ddx27)
03009 Ribosome biogenesis [BR:
psex03009
]
120514502 (ddx27)
Enzymes [BR:
psex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120514502 (ddx27)
Spliceosome [BR:
psex03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120514502 (ddx27)
Ribosome biogenesis [BR:
psex03009
]
Eukaryotic type
Pre-60S particles
Helicases
120514502 (ddx27)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
PRK
Zip
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120514502
NCBI-ProteinID:
XP_039590844
LinkDB
All DBs
Position
14:complement(36276538..36347763)
Genome browser
AA seq
787 aa
AA seq
DB search
MKGREMLCRKSGAVNMFSDLDLIGTIAEEDDVSEAEESESEDEAEQPIVLGKKRKQMMGR
SSEFNPTFEFGERDGLYSEDWAMADVLAQIKKRKAPTTLDEKIEQVRKKRKNEEKETKKG
KQTVDVEVKEEEEDSVEEDDGQGKDSDENENEEEEDEEEEEESDEEDEFSSEEEAVLTKA
DTLKVKDRKRKKPVEEPQTFYEDASHYDDSLTFQDMNLSRPLLKAITTMGFKQPTPIQKA
CIPVGLLGKDICACAATGTGKTAAFMLPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHT
VARQLAQFSSITFCLAVGGLDLKSQEAALRAGPDVLIATPGRLIDHLHNTPSFELSSIEV
LILDEADRMLDEYFEEQMKEIIRLCSFQRQTMLFSATMNEEVKDLAAVSLNHPVKIFVNS
NTDVAPYLRQEFIRIRPNREGDREAVVAALLTRTFPDHVMVFTQTKKQAHRMHIFLGLLG
LKVGELHGNLSQMQRLEGLRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHY
VHRVGRTARAGKVGRSVSLVGEQERKMLKEIVKKAKTPVKARVIPQDVVLKFRDRIEKLE
KDIYAVMRLEKEEREICRSEAQISSAKKKLGNEKESQPSRTWFQSHEERKKEKMGKALQE
FDLAIRGKKKRAKFLQERKKELSGEERVQFEILKSQMYAERVAKRSHKPKRARAMAEDEP
ATTKKTKKSNAGNKVKKSVFDEELTNTSKRSLKKFRAGPSFEDKRRLGRPTNKKGGGFKS
KAKYRRK
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgaagggacgcgaaatgctttgcagaaaaagtggtgcagtaaatatgttttcagacttg
gaccttattgggaccattgccgaggaggacgatgtttcagaagcggaggagtcggagtcg
gaagatgaagcagagcagcccattgttcttggcaagaaaaggaagcagatgatgggacgt
agctcagagttcaatccaacatttgaatttggggagcgcgatgggctgtatagtgaagac
tgggctatggcagatgtgctggcacagataaaaaagaggaaggcacccacaacccttgat
gaaaaaatagagcaagtcagaaaaaaacgcaaaaatgaggagaaggagaccaaaaaggga
aagcagacagtggatgtagaggtaaaagaagaggaagaagacagtgtagaagaagatgat
ggtcaaggtaaagacagtgatgaaaacgaaaatgaggaggaggaggatgaagaagaagaa
gaagaaagtgatgaagaggatgaattttcttctgaagaagaagcagtcctaaccaaagca
gacacgttaaaagtcaaggataggaagagaaagaagcctgtagaggaaccacaaacattt
tatgaagatgcatctcactatgatgacagtttgactttccaggatatgaacttgtctcgt
cccttattaaaggccatcacaaccatgggattcaagcagccaacccctattcaaaaggct
tgcatccctgttgggctcctgggtaaggacatctgtgcctgtgccgcaactggaactgga
aagactgctgcattcatgcttcctgtccttgagcgactaatttataaaccccgccaggct
cctgtgacacgtgttcttgttctagtaccaactcgtgaactgggtatccaggtccatact
gtagctcgccagttggctcagttcagcagcattactttttgcctagcagtcggtggactg
gatttgaaatcacaagaagctgccctgagagctggccctgatgttcttattgccactcca
ggcagattaattgatcatcttcataacactccttcttttgagctaagcagcattgaggtt
ctcattttagatgaggctgacaggatgcttgatgagtattttgaggagcaaatgaaagaa
atcattcggctgtgctctttccagcgtcagactatgttgttttcagctacgatgaatgaa
gaggtaaaagatctggctgctgtatctctgaatcatccagtcaaaatatttgtaaacagc
aatactgatgtggctccatacctccggcaggagtttatccgaattagaccaaatagggaa
ggggatcgggaggctgttgttgctgctctgttgactcgaactttccctgatcatgtgatg
gtcttcacacaaaccaagaaacaggcccatcgaatgcatatcttcctaggattgttgggc
ctgaaagtaggagagctccatgggaacctttctcagatgcagcgacttgaaggtcttcgc
cgatttaaagatgaacagattgatatccttgtagcaacagatgtagcagccagaggtctg
gatatagaaggagttaaaacggtaatcaactttacaatgcccaacacagtcaagcactat
gtccacagagtgggtcgcacagcaagagctgggaaggtgggacggtcagtgtctcttgta
ggggaacaggaaagaaagatgttaaaggaaattgtgaagaaggcaaagacccctgtgaaa
gcacgagttattcctcaagatgttgtgttaaaatttcgtgaccgaattgagaaacttgag
aaggatatttatgctgtgatgcgtttagagaaagaagagcgtgaaatatgccgctcagag
gctcagataagctctgctaagaagaaacttggaaatgaaaaagagagccagccatccagg
acctggtttcagtcacacgaagagcgcaaaaaagaaaaaatgggaaaggctttgcaggag
tttgacctagctataaggggaaagaagaagagagcaaagtttttgcaagaaagaaagaag
gagctctcgggggaagaacgtgtccagttcgagatcctgaaatcccagatgtatgcagag
cgagttgcaaaacgatcccacaaaccgaaaagagcacgtgcaatggcagaggatgagcct
gccacaacaaaaaaaacaaagaaaagcaatgctggaaataaggtgaagaaatctgtgttt
gatgaagagctaaccaacactagcaagaggtctcttaagaaattccgtgcaggtccatcg
tttgaagacaagaggagacttggaaggcctactaataaaaagggaggaggtttcaaatcc
aaagccaaataccggagaaagtga
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