Polypterus senegalus (gray bichir): 120514635
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Entry
120514635 CDS
T08668
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120514635 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psex04121
]
120514635 (herc4)
Enzymes [BR:
psex01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
120514635 (herc4)
Ubiquitin system [BR:
psex04121
]
Ubiquitin ligases (E3)
HECT type E3
120514635 (herc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Motif
Other DBs
NCBI-GeneID:
120514635
NCBI-ProteinID:
XP_039591067
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All DBs
Position
1:complement(306170789..306306961)
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AA seq
1053 aa
AA seq
DB search
MLCWGNASFGQLGLGGIDEEVVIEPRSCEFFQVKKVRDVGCGRRHTVFVLDDGTVYTCGC
NDLGQLGHEKGRKKPEQVGALDAQNIVTVSCGEAHTLALNGKGQVFAWGLASDGQLGLSG
AEECIRVPKNIKSLSEIQIVQVACGYYHSLALSKDSKIFSWGQNKYGQLGLGMESKSQSS
PQHIRSLLGIPFGQIAAGGAHGFALTLSGAIFGWGRNNFGQLGVNDDKDRYAPVLLKSLR
TQKVIYVCCGEDHTAALTKEGGVFTFGAGGYGQLGHNTTSHEVNPKKVFELMGSVVTQIA
CGRQHTLAFVPSSGRIYAFGLGGNGQLGTGSTSNRKSPFTVKDNWLQHNSQCGPDINIGN
CCCVKRIFAGGDQSFAHFFHHKNSLLPDDFRNPEPSKQILTLNEETIERWLSQSQGRHSF
EILGEVEMVLSSASCINGSFLSLSNPDHYKTSSKFSGVDMNAARLLFHRLVQADHSQISK
QVAASLEKNLIPHLNSSPPDIEALRLYLTLPECPLLSDPNNFITLAIPFGLAIVALQDTA
RKVLENWWSMLEPPAFLRMVELYKEVVMSLLKTQKIGIPHSEQPIFNRFLHAALKVLEIF
HRVNEKASQIIQYDKFYIHELQNLLDIKNDYITWIQQQMYGMDLNHGLEMPVTICTYPFV
FDAQAKTTLLQTDAVFQMQMAMDQAHRQNFTSLFVPVLESVNPCLMIIVRRENIVEDTME
VLRKTKNVDYKKPLKVIFVGEEAVDAGGLRKEFFLLIMRELLDPKYGMFRYYEESRLIWF
ADKTFEDIDLFHLIGVICGLAIYNLTIVDLHFPLALYKKLLNKPATIDDLKELMPDVGRS
MQQLLDYPEDNVEETFCLNFTITVENFGATEVKELVLNGANIFVNNQNRQEFVDAYVDYV
FHASVAHLFDAFSDGFHKVCGGKVLQLFQPSELQAMVTGNTNYDWKELEKATEYKGEYWA
EHPTIRLFWEVFHELPLEKKKKFLLFLTGSDRIPILGMKSLKLVIQPTGGGEQYLPVAHT
CFNLLDLPKYTDKSTLQTKLIQAINHYEGFSLI
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgttggggtaatgcctcctttggtcagttggggttaggaggaattgatgaagaa
gtagtgattgagcccaggagttgtgaattcttccaagtaaagaaagttagagatgtgggc
tgtggacgtcggcatacagtgtttgttctggatgatgggactgtgtatacatgtggttgc
aatgatcttggtcagctgggtcatgagaaaggcagaaaaaaaccagaacaagttggggcc
ctggatgctcagaatattgtaactgtttcatgtggagaagctcacaccctagctctgaat
ggcaaaggacaggtttttgcctggggtctagcatctgatggacagcttgggttatcagga
gcagaagaatgcatacgtgtgccaaaaaacatcaagagcttgtctgaaatccagattgtc
caggtagcctgtgggtactatcattctcttgcattatcaaaagacagcaagatattctca
tggggtcagaataaatatggacaacttggattgggcatggaatcaaaaagtcaatcttct
ccacagcatatcagatcccttcttggtattccttttggccagatagccgctggaggtgcc
catggatttgcactcacgctctcaggggccatctttggatgggggcgcaataattttgga
caactgggtgtcaatgatgataaggatagatatgctccagtacttttgaagtcattaagg
acacagaaagtaatttacgtatgctgtggagaagatcatactgctgcacttaccaaggaa
ggcggtgtatttacatttggtgctggaggatatggtcagttgggtcataacactaccagt
catgaagtaaaccctaagaaggtctttgaattaatgggaagtgttgtcacacagattgcc
tgtggtagacagcatacattggcatttgttccttcatctggaagaatttatgcttttggc
ctaggaggaaatggacagttgggtactggatctactagcaaccgaaagagtcctttcaca
gttaaagacaactggctgcaacataatagccagtgcgggcctgatataaatattggcaac
tgttgctgtgtcaagagaatttttgctggaggagaccaaagctttgcacatttttttcac
cataagaattctttgcttccagatgatttcagaaatcctgaaccaagcaagcaaatattg
acattaaatgaagaaactattgaaaggtggttaagtcaatcacaaggaagacattcattt
gagatattaggtgaagtagaaatggttttgtcttctgcaagttgcatcaatggaagtttc
ttatcattaagtaatcctgaccattacaaaactagctccaaattctcaggggtagatatg
aatgcagcacggcttctatttcaccgacttgtacaagctgatcactcacagatctccaaa
caggttgcagccagtcttgaaaaaaatcttattccacatctgaatagttctcctcctgat
attgaagctcttcgtttgtacctcacacttcctgagtgcccactcttgagtgaccccaat
aactttattacattagctatcccttttggtttggctattgtcgccctgcaagatacagct
cggaaagtcttagaaaactggtggtcgatgcttgaacctcctgctttcctaagaatggtt
gagttgtacaaggaagtagtcatgagccttctgaaaacgcagaagattggaattcctcat
tctgagcagcccatcttcaataggttcctacatgctgccttgaaggtcctggagatattt
cacagggttaatgaaaaagcctcacaaatcatccagtatgataaattctatattcatgag
ctgcagaaccttctggacattaaaaatgattacataacgtggatccagcagcagatgtat
ggcatggatctcaaccatggactggagatgccggttacaatttgcacatatccttttgtc
tttgatgcccaagctaaaaccactttgttgcagacagatgctgttttccaaatgcagatg
gctatggatcaggctcaccgacaaaacttcacttcattgtttgtgccggtacttgaatca
gtaaatccctgtctgatgattatagtgaggcgagaaaatattgtcgaagacaccatggag
gtcttaaggaaaacaaagaatgtggactacaagaaacctcttaaggtcatttttgttggt
gaagaagctgtggatgcaggtggtcttcgaaaagaattctttctccttataatgagagag
cttctcgatccaaagtatggcatgtttagatattatgaagagtctagactcatatggttt
gctgataagacctttgaagatattgatttgttccacttaattggtgtaatctgtggcctt
gctatttataatttgacaattgtagaccttcatttccctttggcactgtataagaagctg
ctaaataaacctgcaacaatagatgacctcaaggagctgatgccagatgtagggaggagt
atgcagcagctactggattatccagaagataatgtggaggaaaccttctgcttgaatttt
actatcactgtggaaaattttggtgcaacagaagttaaagagcttgttctcaatggtgcc
aacatttttgtgaataatcaaaacaggcaagaatttgtcgatgcatatgttgactatgtg
tttcatgcatctgtggcccacttgtttgatgccttcagtgatggattccataaagtctgc
ggtggaaaagtgcttcaactctttcagcccagcgagcttcaggcaatggtgactggaaac
accaactatgactggaaggagcttgagaaggccactgaatataagggagaatattgggct
gaacatccaaccatcaggctcttctgggaagtgttccatgaacttcctttggaaaagaaa
aagaaattccttttgtttttgacaggaagtgaccgaattccaatccttggcatgaagagc
ttgaaactcgtcatccagccgacaggaggtggagagcagtacctgcccgtggcacacact
tgctttaaccttcttgatctgcccaaatacacggacaaaagcacacttcagaccaagtta
atacaagccatcaatcactacgaggggttcagtttaatataa
DBGET
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