Polypterus senegalus (gray bichir): 120514939
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Entry
120514939 CDS
T08668
Symbol
tnr
Name
(RefSeq) tenascin-R
KO
K06252
tenascin
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04510
Focal adhesion
psex04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120514939 (tnr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120514939 (tnr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
psex00536
]
120514939 (tnr)
Glycosaminoglycan binding proteins [BR:
psex00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120514939 (tnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Fn3_Dep-1_2nd
EGF_Tenascin
FN3_Tor_3rd
Interfer-bind
EGF_2
DUF4998
GH101_dom-5
Lzipper-MIP1
Motif
Other DBs
NCBI-GeneID:
120514939
NCBI-ProteinID:
XP_039591531
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All DBs
Position
14:86796820..87005132
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AA seq
1354 aa
AA seq
DB search
MSCNACRSFTLQNILLGLSVTFLLVSVHGGFLVKTTRRRRDTKELEGQNANESLSLKGKA
MVFNHVYNINVPLESLCSVSLDSSAGDGVKVGEKEAATQYTEHTMDAENQVIFTHKINIP
KQACACPSSMTMQELVNRIEVLEREVSFLRHQYSTHCFGESPVSGRLDYVPQCSGHGNFS
MDICGCICEDGWMGKNCSEPRCPEDCSGRGLCLEGECICDSDFTGDDCSQERCPNDCSGK
GLCIDGECVCEETNTGDDCSEVRCLNDCSDQGMCINGTCECKEGHWGEDCSLLTCPNSCS
QKGRCKDGTCTCDEGYVGSDCSSVAHPLKLKVSAIAEHAIDLEWEGPLIVEDYLIAYMPT
TPGGVQLELRVPGNWTSCTLGELEPGVEYNISIYATLDNVRSAPVSVQVSTYLSPPEGIL
FKSITETSVEVQWEPFSYSFDGWEISFIPKDNEGGMIAQLPSTMTSFNQTGLKPGEEYTV
NVVALKDQARSPPTSAVVKTLIDGPSHLIVRDVSDTVAFVEWTPPKAKVDEILLSYGPLD
ANAPRTMFRLQPTLSQYSLQVLRPGVHYEVSVTGIQGGVTSDSMSYVFATDIDAPKNLRV
VSKSSKSLDLEWDNSEAEVDSYKVVYSTLAGDQYHEVIVPRNDGPTTRAALTELVPGTEY
GIGISASMGSNQSSPATMNARTDLDSPMDLTVTASTDNSISLQWSKVKGPIDHYRVKYTA
SNGQAAEVLVLQNVSDITLTDLEPGTEYAIVVTAQRGRQQSSPVSIDAFTGFRPVTQLYF
SEITSSTVTVAWSSPAPPADMFILNYNPQDHGETLQVTLEGSKTQAKLTGLQPSTEYIVT
LVTIQGTVPFEPVTGSVTTGLDPPRETSYLNVTEDSVSLSWLPPIAPFDYYKMSYQSSRG
RVENILIDNHITEYTVSNLHPATKYDINLTAVRGSQESDIVSITAHTAMDSILGLKVVDI
TPNGALLQWHPPLSSVDNYVLVITHNQMTADTKIVEGTSREYKLTNLIPTTTYTVAMYAT
KGSVTSETINTKFTTPMDAPQNLTATEVTHRSALIAWKPPVSDIDNYVLTYTSADRNRKE
LILDAEDTWIRLEGLSETTEYSVRLHAAHGSETSDSVLTTFTTSSRLFAMPQNCAQHLLN
GETLSGIYTVYINKDPNQGVQVYCDMTTDGGGWIVFQRRQNGLTDFARKWNDYKVGFGNL
ENEFWLGLDNIHRITSQGRYELRIDMRDGQESVYANYDRFFIGDARNLYKLRIGEYNGTA
GDSLSYHQGRPFSTKDKDNDIAVTNCALSYKGAWWYKNCHRANLNGKYGESRHSQGINWY
HWKGHEFSIPFIEMKMRPFNYRNISEKKRRSARL
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atgagctgcaatgcttgcagaagttttactctacaaaacattcttcttggactttctgtg
acatttttgttggtttcagtgcatggtggatttcttgtaaagaccacgagaagaagaagg
gacactaaggaattggaggggcagaatgccaatgaaagcttatccttgaaggggaaagcc
atggtttttaaccatgtgtacaacatcaacgttcctttagaatcactgtgttctgtcagc
ttggattcttctgctggggatggagtaaaagtgggagaaaaagaagcagccacacagtac
acagagcacacaatggatgcagaaaaccaggtgattttcacacataagatcaacatccca
aaacaagcctgcgcctgtccgagttcaatgaccatgcaagagctggtcaatcgtatagag
gtgttggagagggaggtctcctttctgaggcaccagtacagtacccactgctttggagaa
agtccagtctcaggtcggctggactatgtgcctcagtgcagtggacatggaaattttagc
atggacatttgtggctgtatttgtgaggatggctggatgggaaaaaactgttcagaacct
cgctgtcctgaagactgctctggcagaggcttatgtcttgaaggtgaatgtatatgtgat
agtgatttcactggggatgactgttcccaggagcgatgccccaacgactgcagtggaaag
ggactgtgcattgatggtgaatgtgtctgtgaagaaactaacactggggatgactgttct
gaagtccgttgtctcaacgactgttctgaccaaggcatgtgtattaatggaacctgtgaa
tgcaaggagggtcactggggagaggactgttcacttctgacctgccccaacagctgcagc
caaaaaggtcgctgtaaggatggcacttgtacttgtgatgaagggtatgtgggcagcgat
tgttcatcagttgctcatcctttaaagctgaaagtgtctgcgattgctgaacacgctatt
gacttggagtgggaaggtcctttaatcgtggaggattatctgattgcttacatgccaaca
actcctggaggtgttcagctagagctgagggtgccaggcaactggacaagctgcacactt
ggtgagctggagcctggtgttgaatacaacattagtatctacgccaccttggataatgtg
cgcagtgcaccagtcagtgtccaagtgtcaacatatctctcgcctccagaaggtatactt
ttcaaatccatcacagagacatcagtagaggtgcagtgggagccattttcatactctttt
gatggctgggaaattagcttcattccaaaggacaatgaaggtggaatgattgcccagctt
cccagtacgatgacatctttcaaccagacagggctaaagccaggcgaagagtacactgta
aatgtggttgcactaaaggatcaagccagaagtcctcccacttctgcagtggtgaaaact
ttaattgatggtccaagtcatctgattgttcgagatgtatctgatacagtggcctttgtg
gaatggacaccaccaaaggcaaaggtggatgaaatcttgctgtcttatggacccctggat
gcaaatgctccccggacaatgttcagattgcagcctactttaagccagtactccttgcag
gttctccggcctggagttcactatgaagtctcagttactggcattcagggaggagttacc
agtgacagcatgtcttatgtatttgctacggacattgatgctccaaaaaatctccgtgta
gtctccaaaagttctaaatctctggatctggagtgggacaatagtgaagctgaagtggat
agttacaaagtggtctacagtactctggctggagatcagtatcatgaagttattgtacca
cgaaatgatggaccaaccactagagctgcactcacagaattagtaccaggcacagaatat
ggcattgggatatctgccagcatgggcagcaaccaaagttcaccagcaactatgaatgca
agaactgacctggacagccctatggatttgactgtgactgcctccactgataattcaatc
tccttgcagtggagcaaagtcaaaggtccaattgaccattatcgagtcaaatatactgca
tccaatgggcaagcagctgaagttcttgtcctccagaatgtttcagacatcacactgact
gacctggaacctggaactgagtacgcaatagtggttacagcacagcgtggcaggcagcaa
agctctccagtcagcattgatgctttcacaggattccgacctgtcacacagctgtacttc
tccgaaatcacttcttccacagtgacagtggcttggagttcacctgctccaccagctgat
atgtttatcctcaactacaatccccaggaccatggtgaaaccttacaggtcactctagaa
ggctcaaaaactcaggctaaactcaccggtctgcaaccatccacagagtatattgtcaca
ttggtcactatacagggcactgtaccctttgaacctgtaacgggctcagtaaccacagga
ctggacccaccaagggaaacatcgtacttaaatgttacagaagactcagtctcgttatcc
tggttaccacccattgcaccatttgactactacaagatgtcctaccagtcatcacgagga
agagtggaaaatatactgattgacaatcatataacagaatacaccgtgagcaatctgcac
cctgctacaaaatatgacatcaacctaactgctgtacgaggaagtcaagagagtgacatt
gtcagcattacagcacacacagctatggacagcattctgggactgaaggttgtggatatc
actccaaatggagctctgcttcaatggcacccccctctctctagtgtggacaactatgtt
ttggttataacgcacaatcagatgacagcggataccaagatcgtggaaggcaccagtcga
gagtataaacttaccaacctcattcccactactacctacacagtggccatgtatgctacc
aagggatccgtgaccagtgaaaccattaataccaaatttactacacctatggatgctccg
cagaacttgacagctactgaagtgacccatcgaagcgccctaattgcttggaagcctcca
gtctctgacattgacaactatgtgctcacctacacatctgctgaccgaaacagaaaggaa
ctgatcttggacgctgaagacacatggatccggctggaaggcctctcagaaaccactgag
tattcggtcaggttacatgctgctcatggttctgaaactagcgactccgtcctcaccact
ttcaccaccagtagtcgtctctttgcaatgccccagaactgtgcgcagcaccttctgaat
ggtgaaacccttagtggcatttacactgtttacataaacaaggacccaaatcaaggagtt
caagtgtactgtgacatgactaccgatggtggaggctggattgtattccaaaggcgacag
aatggcttgacagattttgccagaaagtggaatgattataaagttggatttggcaacctg
gagaatgagttctggcttggactggataatattcaccggatcacctctcaagggcgctat
gaacttcgaatcgatatgcgagatggacaagaatctgtgtatgctaattacgaccgattc
ttcatcggtgatgcaagaaacttgtacaagctcagaattggagagtacaatggaacagca
ggggactccctaagctaccaccagggacgcccattctccactaaggacaaagacaatgac
atcgcagtcaccaattgtgccttatcatataaaggagcttggtggtacaaaaactgtcac
agagcaaacctgaatggaaaatatggagagtctaggcatagtcaggggataaactggtat
cactggaaaggacatgaattctctattcccttcatagagatgaagatgcgcccattcaac
tatcgaaacattagtgagaaaaagcgaagatccgcaaggctataa
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