Polypterus senegalus (gray bichir): 120515125
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Entry
120515125 CDS
T08668
Symbol
smg7
Name
(RefSeq) protein SMG7 isoform X1
KO
K14409
protein SMG7
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120515125 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120515125 (smg7)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
120515125 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
120515125 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
zf-AD
Motif
Other DBs
NCBI-GeneID:
120515125
NCBI-ProteinID:
XP_039591787
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Position
14:complement(79898266..80011102)
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AA seq
1194 aa
AA seq
DB search
MMNLCAQYLRQAEALKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQINTSAIVKPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
KTKWSVSDFIKAFIKFHGHVYLSKSLEKLNNLREKLEEQFQRLILQKAFSSQQLVHITVI
NLFELHHLRDFSNETDDHNFSSDEQLSWIQLLGLFMSFLGVMCSLALLNANREELLAECP
LPAIKVSLDWLKLRPNVFHEGAVDERQYIWPWWVSLLNTFQPRDSDITCASATPLPEEFE
LQGFLALRPALRTLDFSKGHQGIVVDKEGQQLRTRHQRLICLGKWIADNQPRLVQCRTEE
DILIFVTDIPELVIENPPESKDGPVLQESSNAEQTSNEGSQGLKSVLSIGKNQNSNSDAG
EKPVVTFKENIKPREQPRELIRNQHLKEGIKERRDFIKGTNMVNKNELKKDNKRRSDPKK
NSLDKSLETGKQNASVQVKSQSDVRKTPVSEARKTPVTQTQTQTSSSSQFIPIHHPGAFP
PLPSRPGFPPPAYVIPPPVAFSVSPGFTFPTGVSVPGAFLQPATHTQTGTQVQSGKQSHI
PYSQQRPSGPGSISQGPPQPQGQQQTMQQQGQSPAQLQVQAMSQQQQQSPTKPVQQLGKS
PPHHPGIQQYIQAEQQSTQLWNQHQVQPPIQKATLQMPLKQPFYMPPQDPLKLFEQSLQS
VQMQQQQTNMDKKLKSFPAEPFSQNSSEVKMQDYYWDTPYRITDNRQIMGQQVNSDRLGK
RQQGIFRSDQDNVPRSFEDSKSSPLLPPDLLKTLADFEEEEELAFAKPHDYYQALAGPLS
SAPGRNLFLPNQSRLDRPSELISQPPSILSLSGFSMQENSYPNSIFSEAYGKNITASTKP
EGTSSVSHQEPSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHSHNSV
PFSNFGPIGTPDNRDRRVNDRWKLEKSAMGVFGLDYLPSTSSSVVENSWHQTAAPCNTWA
AQESPMDDSPVLLDSLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGHGTMNPPH
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacctctgcgcgcagtacttaaggcaggcagaggccctgaaggctgatatgact
gattctaaactaggtccagcagaagtctggacatcaaggcaggcactgcaggacctttac
cagaaaatgctggtgacagatttggagtacgcgcttgacaagaaagttgagcaagatctt
tggaaccatgcattcaaaaatcaaataacaacactacagagtcaagctaaaaacagagca
aatcccaacagaagtgaagtacaggccaatttgtctctttttcttgaggcagctagtggt
ttctacacacagttgctgcaggagctttgcacggtattcaatgtggatttgccttgccgg
gtaaaatcttcacagctcggaataattagcaataaacagattaacaccagcgccattgta
aagccacagccaagttcatgctcttatatttgccagcattgccttgtacatcttggagac
attgcacgctaccgtaaccaaacaagtcaggcagagtcttactaccgacatgctgctcag
cttgtaccttcaaatgggcaaccctacaatcagctggctattctagcttcctctaaaggt
gatcacctgactaccatcttttactactgcagaagtattgctgtaaagtttccgtttcct
gctgcttccacaaaccttcagaaagcactgtcaaaagctcttgagagtcgggacgaagta
aagactaaatggagtgtatcagacttcattaaagcctttatcaagttccatggccatgtg
tatttaagtaagagtttggagaagctaaacaacttgagagaaaagcttgaagaacaattt
cagaggcttatacttcaaaaggcatttagctctcagcagcttgttcatatcactgttatt
aacctatttgaacttcatcacctccgagatttcagcaatgaaactgatgatcacaatttt
agctcagatgaacagcttagctggattcaactactgggactttttatgtctttccttgga
gtaatgtgcagcctcgctctgttaaatgcaaatcgtgaagaattattggctgaatgtcca
ctaccagctatcaaagtatctttggactggctaaaacttagacccaatgtgtttcatgag
ggagctgttgatgaaagacagtatatttggccttggtgggtttctcttctgaacaccttt
cagccaagagattcagatatcacatgtgcttcagccactcccctcccagaggagtttgaa
ctgcaggggttcttggctcttaggcctgcactcagaaccctagatttctcaaagggtcat
caaggcattgttgtggataaagaaggtcagcagcttagaactcgtcaccagagactaatc
tgtcttggcaaatggattgcagataaccagccaaggcttgttcagtgcagaactgaggaa
gatatactcatttttgtaactgacatccctgaattagtcattgaaaatccaccagaaagc
aaagatggcccagttctacaggaatcttccaatgctgagcagacatcaaatgagggcagc
caaggcttaaaatctgtcttatctattggaaaaaatcagaacagtaactcagatgctgga
gaaaaaccagttgtcacatttaaagagaatattaaacctagagagcagcctcgcgaactt
atccgaaatcagcacctaaaagaaggcattaaggaaagaagagatttcattaagggcact
aatatggttaacaaaaatgaactgaagaaagataacaagagaagaagtgatcctaaaaag
aattctcttgacaagagcttggaaactggcaagcaaaatgcatcagtccaggtgaaatca
cagtctgatgtgagaaagactcctgtgtcggaagcccgaaaaactccggtaactcagacc
cagacacaaacaagtagctcttctcagtttatcccaatacatcacccaggagcctttcca
cctcttcccagtagaccaggatttccaccccctgcctatgttatacctccaccggttgcg
ttttcagtgagcccaggttttacatttcctactggggtatccgtacctggagcatttctc
cagcctgccacacacactcagacaggaacccaagttcaatctgggaagcagtctcacatt
ccttatagccaacaaagaccatctgggccaggatcgattagtcaagggcctccacagcca
cagggccaacagcaaacaatgcagcaacagggacaatccccagcacagctgcaggtgcaa
gctatgtcacagcagcaacaacagtccccaactaaacctgttcagcaactggggaagagt
cctcctcatcaccctggaattcagcagtacattcaagctgagcagcagtcaacccaactc
tggaatcaacaccaagtacagcctcctattcagaaagcaacattgcaaatgcctctgaaa
cagcctttttacatgccacctcaggaccctttaaagctttttgagcaatctctccagtct
gttcaaatgcaacagcaacaaactaatatggacaagaaactgaagtcttttcctgcagag
ccattttcccaaaactcttcagaggtgaagatgcaggactattattgggatacgccatac
cgtattactgacaacaggcaaataatgggtcagcaagtaaacagtgaccgattgggcaaa
cggcagcaaggcatttttcgctctgaccaagacaacgttccaaggtcttttgaggattcc
aagagctcccctctgctacctcctgacctgttaaaaacactagctgattttgaggaggag
gaagagttggcatttgctaaaccccatgattattaccaggccttggctggccctctgagc
tctgctcctggaagaaacctatttctgccaaatcagtcaaggctggatagaccatctgag
ctgatttcacagccaccttctattctctcactgtcaggattttcaatgcaggaaaattct
tacccaaacagcattttcagtgaggcatatggtaaaaatataactgcgagcacaaagcct
gagggtacatcatctgtgtctcatcaggaaccttccctctattccttgtttgaagggaca
ccgtggtcaccttctcttcctgctagttcagatcactcaacaccagcaagccaatctcca
cactcctcaaatcccagcagtctgccgtcttccccacctactcacagccacaactccgtc
cctttctctaattttggacccatagggactccggacaatagggacaggagggtgaatgac
cgttggaaactggaaaaatctgccatgggtgtgtttgggcttgactatttgccctctaca
tcttcatctgtggtggaaaacagctggcatcaaactgcagctccctgcaatacttgggct
gcacaagaatctccaatggatgactcccctgtcctactggatagtctaaagtcaatttgg
tcgagctctatgatgcatcctgggccttcagcactggagcagctgttgatgcagcaaaaa
caaaagcagcaaagggggcatggcacaatgaacccaccacattga
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integrated database retrieval system
