Polypterus senegalus (gray bichir): 120515230
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Entry
120515230 CDS
T08668
Symbol
pabpc1l
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03015
mRNA surveillance pathway
psex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120515230 (pabpc1l)
09123 Folding, sorting and degradation
03018 RNA degradation
120515230 (pabpc1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120515230 (pabpc1l)
03041 Spliceosome [BR:
psex03041
]
120515230 (pabpc1l)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120515230 (pabpc1l)
mRNA cycle factors
Stress granule specific factors
120515230 (pabpc1l)
Spliceosome [BR:
psex03041
]
Complex C
Other components
Complex C specific factors
120515230 (pabpc1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_occluded
RRM_3
RBD_RDR6
DUF6262
Motif
Other DBs
NCBI-GeneID:
120515230
NCBI-ProteinID:
XP_039591972
LinkDB
All DBs
Position
14:complement(4089838..4146239)
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AA seq
625 aa
AA seq
DB search
MNSSGPGYPLASLYVGDLHHDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQ
QPADAECALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAANRAIDTMNGMLLNDRKVFVGHFKSRKERE
AEFGAKAMEFTNVYIKNFGEDVNDEKLREIFSQYGRTLSVKVMVDERGRSRGFGFVNFEK
HEEAQKAVEAMNGKELNGRIIYVGRAQKKLERQGELKRRFEQLKQERIHRYQGVNLYVKN
LDDGIDDEKLRKEFAPYGTITSAKVMTEAGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLASVRAMPGPVIGAYPQSSGFFMSAIPQTPNKPFY
APNAVTQIRPAPRWIAQPPRPHAYQAPGPLVRATVTRRPSTPISTMRQASTQAPRVISNT
QRMANIGTQTTGGRSALGTPMVRGINQYKYSPGVRNVQHILTVPTPVATQPVMEPAVRVH
GQEPLTASMLASAPMQEQKQMLGERLYPLIHAIHPSLAGKITGMLLEIDNSELLHMLESP
ESLHSKVDEAVAVLQAHQAKEVSSK
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgaactccagtggccctggatatccacttgcttctctctatgttggagatctccatcat
gatgtcacagaggctatgctgtatcagaaattctctcctgctggaccaatcatgtctatc
agagtatgtcgtgatattataacccgcaggtctcttggatatgcttatgtaaattttcag
caaccagctgatgctgaatgtgctttggatactatgaattatgaagtgattaaaggtaga
ccaataagaataatgtggtcacagagagatccaggcctgcggaagtcaggggttggaaat
atatttattaagaatatggatgaatcaatcgacaataaagctctgtatgatacattctct
gcttttggaaacattttgtcatgcaaggttgtgtgtgatgagaatggttctaaaggatat
gggtttgttcattttgaaacacatgaagcagcgaacagagccatagacactatgaatggg
atgttgttaaatgaccgcaaagtttttgtgggtcatttcaagtcccgaaaagagagagaa
gcagagtttggtgccaaagcaatggagtttactaatgtttatatcaagaactttggggaa
gatgttaatgatgaaaagttaagagagatattctctcagtatggaaggaccctgagtgta
aaggttatggttgatgaaaggggccggtctcggggatttggatttgttaattttgagaag
catgaagaagcacaaaaagctgttgaggcaatgaatggaaaggaactaaatggtagaata
atttatgttggaagggcccagaagaaattggagaggcagggagaactaaagcgccggttt
gagcagttgaaacaggagagaattcatagatatcagggtgtcaatctatatgtaaagaat
ttggatgacggtattgatgatgaaaaattaaggaaggagtttgcaccctatggaaccatt
acaagtgccaaggtaatgactgaggctgggcacagtaaagggtttggatttgtctgcttc
tcatctcctgaagaggctacaaaagcagtaactgaaatgaatggtcgcattgtcagcact
aagccactttatgtggctttggctcagaggaaagaagaaaggaaggctattctgacaaat
cagtatatgcagagacttgccagtgtccgtgcaatgccaggcccagtcattggtgcatac
ccgcagtcttcaggattcttcatgtctgctattccacagactccgaacaagcctttttat
gctccaaatgcagttacccaaattagacctgcaccacgctggattgctcagccacctcgt
ccccatgcatatcaagcacctgggcccttagtgagagcaactgttacaaggcgaccttca
actcctattagcactatgaggcaggcatctacacaggctccccgtgtcataagtaacaca
cagagaatggccaatataggaacacagacaactggtggccgttctgctctaggtactcca
atggtacgaggcattaatcagtacaagtattctccaggagttaggaatgtacaacatatt
ctgacagttccaacaccagtggctacacaaccagtaatggaaccagctgttcgtgtacat
gggcaggaacccctcactgcctccatgctggcttcggcacctatgcaagaacagaagcaa
atgctgggtgagcgtctctaccctttgatccatgccattcatccttcactggctggcaag
attactggcatgttgctggagatagacaattctgagcttttgcacatgcttgagtcacca
gagtctctccattctaaggttgatgaagcagtagccgtactacaggcacatcaggctaaa
gaagtgtcctcaaaatag
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