Polypterus senegalus (gray bichir): 120515574
Help
Entry
120515574 CDS
T08668
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
psex
Polypterus senegalus (gray bichir)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
120515574
NCBI-ProteinID:
XP_039592605
LinkDB
All DBs
Position
15:complement(26584440..26985575)
Genome browser
AA seq
1618 aa
AA seq
DB search
MLMRVGFCIFAILTLIFLEGRAQIQRAGCKNVHYDLVFILDTSSSVGKEDFEKVRQWVAN
LVETFEIGPEKTRVGVVRYSDKPTTEFDLGRYTTVEDVKRAARNIRYLGGNTNTGEAISY
ITTRSFSETSGARPSEQGIKKVAILMTDGRSQDYVLEPSKAAHQAGIRVFAVGVGDALKE
ELDEIASEPKSSHVFHVSDFNAIDKIRGKLRRRLCENALCPNIHVEGDRFKPTNGAEKDE
IPGFDLMEYFNVKELFGMKEIGSPSSYVRLGTIPIVQQTEDVFPQGLPDEYAFVTTFKFR
KTSRREDWYIWQIIDKYGIPQVSVRLDGENRAVEYNAIGVTRDAVRAVFRNPEVADLFDR
NWHKIALSIQAQTVSLYLDCKLIQTMPIEEREDIDIQGKTVIGKRLYDSVPIDFDLQRMV
IYCDSRHAELETCCDIPTGPCKVTVVTEPPFIIPTTPQSGEQHGGIKTVNCSCQAGEKGE
VGPPGLDGPRGQKGETGNQGAFGPAGAKGQKGEAGSASSVKGDKGEKGDGGEKGEPGSRG
DRGEKGAIGLSGLAGKKGDRGEKGDPGEAGDPGLPGPLGPKGSHGDAGLPGLPGSGGEPG
KRGDKGERGNDGEKGELGLDGSPGKPGVPGRDGLKGSMGFPGVIGPKGEKGEMGPAGIPG
DAVHSLGLKGEAGPPGPRGPPGPHGPIGPPGPPGADGKFGEPGLQGQRGKKGEAGLPGVD
GLPGPPGPEGPPGKPGPPGHTGPPGLPGEIGFSGKPGEPGKPGLPGKDGLDGLPGNDGPK
GEPGERGLDGFPGKHGPKGEEGSPGSRGLPGEKGEAGQPGLIGLTGLRGERGEQGERGRP
GPLGPKGEKGDKGEAGPVGPPGSPGSTETAVGQPGEPGEPGQTGDKGDKGQPGDPGQRGA
PGDQGLIGPPGLQGAKGDQGAKGAPGENGEPGPPGPQGPQGARGLPGNVGIPGIDGLPGN
DGQKGEKGDPGKEGKQGPSGPAGEQGEAGIPGLPGKGKDGQPGEPGAQGLPGPQGPKGEA
GSPGLPGRIGERGPPGTALPGLPGPPGSQGEKGPQGIRGLPGVAGPQGPPGHNGLPGRQG
ERGDPGEPGRSPELSKKDLEGLLKDVCSDCPPGPAGLPGVSGSKGDKGAEGAPGKDGRDG
YQGPPGPTGPAGPRGLDGIKGSKGDPGRPGENGEKGEKGLPGLPGYPGPVGAAGQPGADG
LPGLAGPPGAPGEKGKEGLKGIQGPPGLPGLMGLHGKEGKEGKQGEPGEPGKQGEIGPPG
RDGLRGTPGFKGHRGEPGSPGPRGEPGMMGPPGKSGSPGKDGDPGAPGQQGLRGPRGEEG
KSGPSGPAGKAGAVGPPGPPGGKGDSGSPGLPGFIGPRGPPGPAGEKGLQGKDGVPGKQG
ERGSKGERGDAGIKGEKGPSGDKGPPGEPGLPGIKGHTGMMGMQGPQGERGPSGVPGAPG
QPGFPGPRGESTSLEELRRLVQEELSKQLDAKMAYLMAQIQPAHVKSSPGRPGPPGPAGK
DGLPGRAGPPGEPGPPGQNGEGPQGPLGPKGERGAKGERGEAGIGQRGEMGPPGPVGPQG
IPGYGKDGVPGTAGTPGEPGNTGPPGPLGPPGPPGQCDPSQCAYYASLAARPSNVKGP
NT seq
4857 nt
NT seq
+upstream
nt +downstream
nt
atgcttatgcgagtaggattctgtatttttgcaattttaacactgatatttcttgaagga
agagcacaaatacaaagagcaggctgtaaaaatgtccattatgacttggtttttatcttg
gacacctcatccagcgtgggaaaagaagattttgaaaaggttcggcagtgggttgccaac
ttagtggaaacatttgagattggaccagagaagacacgagtgggtgttgttcggtacagt
gacaagccgacaactgaatttgatcttggaagatacacaacagtagaagatgtgaaaaga
gctgcaagaaacattcgctatcttgggggtaacaccaacaccggagaagcaattagttac
atcaccacacgcagcttttcagagacaagtggtgccagaccaagtgaacagggcatcaag
aaagtggctatattaatgacagatggaagaagccaagattatgttctggaaccatccaaa
gctgcccatcaggctggcataagagtatttgcagttggcgttggggatgccttgaaggaa
gaattagatgaaattgcatctgagccaaagtcgtctcatgtgtttcatgtatcagacttc
aatgccattgataaaataaggggaaagctaaggaggagactatgtgaaaatgcactttgc
cctaatattcacgtggaaggagacagatttaaacctacaaatggtgcagaaaaagatgaa
attccaggatttgatctgatggagtatttcaatgtgaaagaattgtttggtatgaaagaa
attgggagtccaagttcatatgtgcgccttggaacgattccgattgttcaacaaacagaa
gatgtatttccacaaggcctcccagatgagtatgcttttgtgaccacatttaagttcagg
aaaacctcaagaagagaagactggtatatttggcagattattgacaagtatgggatacca
caggtgtctgttcgtttggatggagagaacagggccgtggagtacaatgcaattggagtc
accagagatgccgtgagagccgtcttcaggaatccagaagtagctgacctgtttgatcgt
aactggcacaagatagccttaagcatccaagcgcagacggtgtccctgtaccttgactgc
aaactcattcaaactatgcccatagaagagagggaagatatcgacatccagggaaagact
gtcattggcaagcgtttgtatgacagtgttcccattgattttgacctccagagaatggtg
atttactgtgactcgagacatgcagagctggagacttgctgtgacattcccactggtcca
tgcaaagtcacagttgtgactgagccaccattcataatacccacaacaccacaaagtgga
gagcaacatggtggcatcaagactgtaaactgctcatgccaagctggagaaaagggggaa
gttggcccacctggacttgacggtcccagaggtcaaaagggtgagactggaaatcaaggt
gcatttgggcctgctggagctaaaggacaaaaaggagaagctggttcagcgtcttcagtt
aaaggagataaaggggaaaagggagatggtggagaaaaaggagagcctggatcaagagga
gacagaggtgaaaagggtgcaattggtctatctggtcttgcaggaaaaaaaggagataga
ggagaaaagggagatccaggggaagctggagatcctggacttccaggaccacttggaccc
aagggatcacatggagatgcgggactaccaggattgccaggatcgggaggggaacctgga
aaaagaggggataaaggtgaaagaggaaatgatggagaaaagggtgaactaggcttagat
ggatcccctggaaaacctggcgtccctggaagagatggcctaaaaggaagtatgggcttc
ccaggcgtaattggacctaaaggagaaaagggtgaaatgggaccggctggaataccagga
gacgcggttcatagtttgggtttgaaaggggaagctggaccacctggtccaagagggcct
ccaggacctcatggacccattggaccaccgggtccacctggtgcagatggcaagtttgga
gaaccaggtttacaaggtcaaaggggcaagaagggagaggctggtttacctggcgtagac
ggattacctggaccaccaggccctgaaggacctcctggaaaacctggcccccctggacat
actggacctcctgggttaccaggagaaattggattttctggaaagccaggagaaccagga
aaaccaggattacctggaaaggatggtttggatggtctgccaggaaatgatgggccaaag
ggtgaaccaggggagagaggtttagatggtttccccggtaaacatggtcccaagggtgaa
gaaggctcacctgggtctagaggtttaccaggggaaaagggtgaagctggtcaaccaggg
ttaataggattaactggactccggggagaacgaggtgaacaaggtgaacgaggaagacct
ggccccctgggacctaaaggtgaaaaaggagacaagggtgaggcaggaccagttggccct
ccaggttctccgggaagtactgaaacagcagtgggtcagcctggagaaccaggagaacct
gggcaaacaggagacaaaggagacaaagggcaaccgggagatcctggtcaaagaggtgcc
ccaggtgaccaagggctcattggccctccaggactacagggagcaaaaggagaccaagga
gcaaaaggagcaccaggagaaaatggagaaccaggccctcctggcccacagggtcctcaa
ggtgcacgtggattgccaggaaatgtgggcattcctggaattgatggcttacctggaaat
gatgggcaaaagggagaaaagggtgaccctggaaaggaaggaaaacaaggaccatctggt
ccagcaggagagcaaggtgaagctggaatcccaggattgcctggaaagggaaaagacggt
caacccggagagcctggtgcccaaggcctgccagggccacaaggacccaagggtgaagct
gggtctcctggattacctggacgtattggagagaggggtccacctggaacagcgctgcca
ggactacctggacctcctggtagtcaaggagaaaaagggccacagggtatcagaggttta
cctggagttgctggtccacaaggtcctcctgggcataatggtttgcctggacgacaagga
gaaagaggagatcctggagagccggggaggtcaccggaattgtccaaaaaagacctggaa
ggccttcttaaagatgtctgcagtgattgccctcctggtcctgcaggattgccaggtgta
tcaggttctaaaggtgacaaaggggcagaaggcgctccaggaaaggatggacgagacgga
tatcaaggaccacctggccctacaggtcctgcaggtccaaggggtcttgatggaataaag
ggcagtaaaggcgatcctggcagaccaggagaaaatggagaaaaaggagaaaagggactt
ccaggtctccctggctatccaggaccagtgggtgctgcaggacaaccaggtgcagatggt
ctccctggactagctggcccacctggagcccctggtgagaagggaaaagaaggtctcaag
ggcatccagggtcctccaggtcttccaggattaatgggattacatggaaaggaaggaaaa
gaaggcaagcaaggagagcctggagagccgggcaagcaaggagagattggccctccaggc
agagatggcctcagaggaactcctggatttaaaggacaccggggtgagccaggcagtcct
ggtccaaggggagaacctggtatgatgggtccacctggaaaatcaggatctccaggaaaa
gatggtgatcctggtgcaccgggacaacaaggtcttcgagggccaagaggggaagagggt
aaaagtggaccatctggccctgctggaaaagctggagctgtaggccctccaggacctcca
ggtggtaaaggggactctggaagtccaggattaccaggctttattggacccaggggccct
ccaggacctgcaggagagaaaggacttcagggaaaggatggagtcccaggaaaacaagga
gaacgtggctccaaaggagaaaggggcgatgctggaattaaaggagagaaaggaccatca
ggagataaaggaccaccaggagaacctggattacctggcattaaggggcacactggaatg
atgggaatgcagggtccccagggagagaggggtccttctggagttccaggggcccctggt
caacctggttttccaggacctaggggagagtccacatcactagaagaactacgaagactt
gtccaggaagagttatcaaagcagctggatgcaaaaatggcctacctcatggctcagata
cagcccgcacatgttaaatcttcacctggccgaccaggtcctccaggacctgcaggaaaa
gatggtctaccaggcagagctgggccaccaggtgagcctgggcctcctgggcagaatggc
gagggtccgcaaggaccacttggtcctaaaggtgaaagaggagcaaagggagagagagga
gaagctggtattggccaacgaggagaaatgggtccacctggtcctgttgggcctcaaggt
attcctggatatggaaaagatggagtgccaggcacagcagggactcctggagagccagga
aacactggaccacctgggcctctcggacccccaggtccacctggacaatgtgatccttct
cagtgtgcttattatgctagtctggctgcaagaccatcaaatgtcaaggggccttaa
DBGET
integrated database retrieval system
