Polypterus senegalus (gray bichir): 120515595
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Entry
120515595 CDS
T08668
Symbol
trim71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120515595 (trim71)
04121 Ubiquitin system [BR:
psex04121
]
120515595 (trim71)
Enzymes [BR:
psex01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120515595 (trim71)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120515595 (trim71)
Ubiquitin system [BR:
psex04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120515595 (trim71)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
zf-RING_5
zf-C3HC4
zf-RING_2
Peptidase_C25_C
DUF4094
YlbD_coat
Motif
Other DBs
NCBI-GeneID:
120515595
NCBI-ProteinID:
XP_039592638
LinkDB
All DBs
Position
15:complement(7477754..7585103)
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AA seq
811 aa
AA seq
DB search
MASFPDSDLQTCPLCKEICGSSAPISSSSSTSSSSSQTSSSSTSSTRRLHVLPCLHAFCR
QCLEGQRSPGDPLKLRCPTCDQKVSISESGVESLPSSNFLFSNLLDVVVSSEEQNKNNCR
SNNHSHGLHRPHHQGEPQCSSCDEGNPATSHCLDCQEYLCDNCVRAHQRVRLTKDHFIER
FMESLHLTSRTNNSSTPVNITQTFHSNYPLLPVFQDRMNFCQQHENEVFRFFCDTCSVPI
CRECSIGRHVGHSFIYLQDAVQDSRAITIQLLADAQQGRQAIQLSIEKAQAIAEQVEIKA
QLVQTEVKAVTSRHKKALEERECELLWKVEKIRQVKAKSLYLQVEKLHQNLNKLDSTISA
VQQVLEEGRNMDILIARERMLTQIQELKALRGILQPQEDDRIMFTPPDQALFIAIKSMGL
ISSGAFAPVTKAAGEGLKRVLQGKVATFTVIGYDHDGEPRLSGGDVISVVAIGPDGNLFG
AEVTDHQNGTYTVSYLPKVEGEHLISVLICNQHIEGSPFKVLVKSGRSYGGVGLPVASFG
GEGDGDGKLCRPWGICVDKEGYIIVADRSNNRIQIFKPCGTFHHKFGTLGSRPGQFDRPA
GVACDSQRRIIVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNAEGKILVS
DTRNHRIQLFGPDGSFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDFNNHRLLVIRPD
CQSARFLGSEGTGNGQFLRPQGVAVDQEGRIVVADSRNHRVQVFEPNGNFLCKFGTQGNG
FGQMDRPSGIAITPDGMIVVVDFGNNRILVF
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atggcttcattccccgattccgatctgcagacatgccccctctgcaaggagatttgcgga
tcttcggctccgatctcttccagctcatctacctcatcgtcttcatctcagacctccagc
tcctctacctcgtccacccgccggctgcacgtcctgccttgtcttcatgccttctgcagg
cagtgcctggaagggcaacgcagccccggagacccattgaaacttcgctgtccaacgtgt
gaccagaaggtctccatctccgaatctggagtggagtctcttccatcgtccaatttccta
tttagcaaccttttagacgttgttgtgtcctcggaggaacagaataaaaataactgcagg
agcaacaaccactcccatgggctgcatcgaccacaccaccaaggggagccccagtgcagc
tcctgcgatgaaggtaacccagctacctcacactgcctggactgccaggaatacctctgt
gacaactgtgtgcgggcccatcaacgtgtccgcctgaccaaagaccactttattgagagg
tttatggagagcctacacctaactagtcggaccaataactccagcactcctgtcaacatc
acccagacctttcactcaaactaccctctgcttccagttttccaggatcgcatgaacttc
tgccagcaacacgagaacgaggtgtttcgcttcttctgtgacacatgctctgtgcctatc
tgccgagagtgtagcattggaagacacgtggggcatagttttatctacctgcaagatgcc
gtccaagactccagggccattactatacagctactggcagatgcacagcaggggcgccaa
gcaattcagttaagcatcgaaaaggcccaagctattgctgaacaagttgagatcaaggca
caactagtacaaactgaagtgaaagccgtcacatcaagacataagaaggctctggaagaa
cgtgagtgtgaactcctatggaaggtggagaagatacgccaggttaaagccaagtcactc
tatctacaagtagagaagctgcatcaaaacctcaacaaactggacagtactatcagtgct
gttcaacaagtcctagaggaaggaagaaatatggatattttaatagcccgagagcgcatg
ttgacccaaatccaggagctcaaggctttgcgtggtatcttacaacctcaggaggatgac
cgcatcatgtttactcctccggatcaggcacttttcattgctattaaatccatgggactt
attagcagtggtgcttttgctccggttactaaagcagctggagagggtctgaaacgggta
ctgcagggaaaagtggcaacatttacggtgatagggtacgatcatgatggtgagcctagg
ctttctggtggggatgtaatttctgtggtggcaattggacctgatggaaatttgtttggg
gctgaagtcactgatcatcaaaatggcacatatacggttagctacttgccaaaggttgaa
ggtgaacatcttatttctgtgcttatttgcaaccagcacattgaaggaagtcctttcaag
gtgcttgtgaagtctggacgaagttatgggggagtgggtctaccagtggcctcttttgga
ggagaaggggatggggatggtaaactctgtcggccctggggcatctgtgttgacaaagaa
ggttacatcatagtagctgaccgtagtaacaaccgcatccagatctttaagccatgtggt
acattccaccacaagtttgggaccctaggctctagacctggccagtttgatcggccagct
ggtgttgcttgtgacagtcagagaagaatcattgtggcagataaggacaatcatcgtatt
cagattttcacttttgaagggcagttcctgttaaaatttggggagaagggaacgaagaat
ggacagttcaattacccttgggatgttgcagtaaatgcagaaggcaagatcttggtatcc
gacacccgtaaccaccgaatccagctgtttgggcctgatgggtctttcttaaataaatat
ggctttgaaggggcactgtggaaacattttgactctcctcgcggggtagctttcaaccac
gagggccacctggttgtgacagacttcaacaatcatcggctgcttgtcatcaggcctgat
tgtcagtcggctcgctttctgggctctgagggtacaggcaatgggcagttcctgaggcca
caaggggtggcagtggaccaggagggccgtattgtggtggccgattcacgtaaccataga
gtacaggtctttgagcccaatggcaatttcttatgcaagtttggcactcagggtaatggc
tttgggcagatggaccgtccatcgggtatagccattacacctgatggaatgattgtagtc
gtcgactttggaaacaatcgaattctagtattctga
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