Polypterus senegalus (gray bichir): 120516058
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Entry
120516058 CDS
T08668
Symbol
vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psex04131
]
120516058 (vps50)
Membrane trafficking [BR:
psex04131
]
Protein recycling
Others
EARP complex
120516058 (vps50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
120516058
NCBI-ProteinID:
XP_039593439
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Position
15:75862679..76253871
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AA seq
959 aa
AA seq
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MQKIKSLMTRQGPKSPQESMNDLSPVENVRIPSKEELREMREQPIDPQAEQEIINSIDEV
YFSNDSFDVVNYELEKLPTVLNLEEIEEYRDKLKKQQAAVSKKVADLILEKQPSYVKELE
RVTSLQTNLQLAAVICTNARRQLSFAKEGFTQASLGLLANQKKRQLLTGLLKSLRTIKTL
QRTDVRLSELLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDVGHYTKVQQAYTLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKLQYKDLCTHITPDSYIPCLSDLCKALWEVMLSYHRTMEWHDEHDNEEVIPASDG
TDEPNFDRSYVKKKLEHGLSRIWQDVQLKVKAYLLGTDMSNFKYDDFIFVLDIINRLMQV
GEEFCGSKSEVLQESIKRQSVNYFKNYHRIRLEELRMFLENETWELCPVKSNFSITQLHE
YKFMGQSRSPSVSPSKQTAAVSTVAMSLFEQYHNGGNPFEMQTDSKDDETEDVLAANGYE
SDELEKSAYQEYDSDSDVPEELKRDYVDEQTGDMPVKSVSRDTLRSRKKSDYSLNKVNAP
ILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHCMSQLFDYYLYAVYTFFGRNDTYESSGL
GLISSRLRTTLNRIQESLIDVEAGSENTSVHIAPDERKEKVPSPHLSHMVDLAASGSLYG
LAERVVATESLVFLAEQFEFLQPHLDTIMPAAKKPFLQQFYSQTVSTASELRKPIYWIVA
AKAIDYEQMLLLMAGVKWDIKEIMSQHNVYVDVLLKEFEKFSKRLGDISKQVRIPLPVSN
VLWEHCIRLANRTLVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDKEFVET
YIKAYYLTENDMEQFIKNHREYSTKQLTNLVNVCLGSHINKKARQKLLAAIDDIDRPKR
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaagtcgttaatgacccgacagggtcctaaaagtccacaagaaagtatg
aatgacctcagtccagtggagaatgtcagaattcctagcaaggaagagctgagggaaatg
agagagcagcccattgacccccaggctgagcaagaaataattaatagcattgatgaagtt
tatttttcaaatgattcttttgatgttgtaaattatgagctggagaaacttcctacagtt
cttaatctggaagagattgaagagtacagagacaaactgaagaagcagcaagctgccgtg
tctaagaaagtagcagatttgattttagaaaaacaaccctcctatgttaaggaacttgaa
agagttacctcactacaaacaaatcttcaattagcagctgtcatctgtacaaatgcaaga
aggcaacttagttttgccaaagaaggatttacacaagccagcctcggactacttgcaaac
caaaagaagagacaattgttgaccggattgttgaagtcactgagaacaattaaaacatta
caacggactgatgtaagattgagtgaactattagaggaagaagattatcctggtgctatt
cagttgtgcttagaatgccaaaaagcagccagcacattcaaacactacagctgtatcagt
gagttaaattcaaaactgcaagacactctagaacaaatagaggaacaactggatgttgct
ttatcaaaaacctgcaaacattttgatgttggccattataccaaagttcagcaggcatac
acacttctgggaaaaacacagactgcgatggatcagctgcatatgcacttcacacaggca
attcacaacacagtgttccaggtggttcttggatatgtggagctttgtgctggcaatgcc
gacaccaagttccaaaagctgcagtataaggacctctgcacacatatcactccagacagt
tacataccatgcctttctgacttatgcaaagccctttgggaggtcatgctaagttaccat
cgtacaatggaatggcatgatgagcatgacaatgaagaagtgattccagcttcagatggc
acagatgaacccaactttgatcgcagctatgtgaaaaagaaattagaacatggattatct
cgcatatggcaggatgttcaactaaaggtgaaggcttatttacttggcacagacatgtca
aactttaagtatgatgacttcatttttgtgctggatattataaacagacttatgcaagtt
ggtgaagagttttgtggtagtaaatcagaagtattgcaggagtcaatcaaacgccagagt
gtaaactattttaaaaactaccacagaatacgtcttgaagagcttagaatgttcttagaa
aatgaaacttgggaactttgcccagtgaagtccaattttagtatcacccaacttcatgag
tacaaatttatgggccagtcacgctctccttcagtgtcacctagcaagcaaactgcagca
gtatccacagtggctatgtcattgtttgaacagtaccataatggagggaatccatttgag
atgcagacagacagcaaagatgatgaaacagaggatgttttggctgctaacgggtatgaa
tctgatgaactggagaagagtgcttatcaggaatatgacagtgacagtgatgttccggaa
gaactcaagagggattatgtggatgagcaaacaggggatatgccagtgaaaagtgtgtct
cgagataccctaagaagcaggaagaagtcagattacagccttaataaggtgaatgcaccg
atcttgacgaacactaccctgaatgtaatcaggcttgttggcaaatatatgcaaatgatg
aatatcctaaaaccaattgcttttgatgtcattcattgtatgtcccagttatttgactac
tacctgtatgcagtctacacattctttggccgaaatgacacatatgagtcatctggactg
ggccttatcagcagcagactgagaacaaccctgaacagaatacaggagagtctgatcgat
gtggaggcaggatcagaaaacactagtgttcatatagcacctgatgaaagaaaagagaag
gtgccaagtccgcatttgagccatatggtggatttagcagctagtggatcactatatgga
ctagcagaaagagtagtagcaacggaatccctagtgtttttggctgaacagtttgagttt
cttcagcctcatcttgacactatcatgcctgcagccaagaagccattccttcaacagttc
tattcccaaactgtatcaactgctagtgagctaagaaaacccatatattggattgtggca
gcaaaagcgattgattatgaacagatgttactgcttatggcaggcgttaaatgggacata
aaagaaatcatgtcccagcataatgtgtatgtggatgtcctgttaaaggagttcgagaag
tttagcaagaggcttggagacatctctaaacaagtccgaattccactacctgtgtcgaat
gttctttgggaacactgcatacgattggctaacaggacacttgttgaaggctacgccaac
gtgaagaaatgtagcaatgagggacgtgctttaatgcaactggattttcagcagttttta
atgaagcttgagaagctcactgacattagacctattcctgacaaagagtttgtggaaaca
tatatcaaagcttactacctgacagaaaacgatatggagcaattcatcaaaaaccatcgg
gaatattctacaaaacagctaactaacctggtgaatgtgtgcctaggatctcacataaat
aaaaaggcacgacagaaactgttagcagcaattgatgatatcgacagacctaaaagatag
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