Polypterus senegalus (gray bichir): 120516115
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Entry
120516115 CDS
T08668
Name
(RefSeq) nucleolar RNA helicase 2-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psex03009
]
120516115
03036 Chromosome and associated proteins [BR:
psex03036
]
120516115
Enzymes [BR:
psex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120516115
Ribosome biogenesis [BR:
psex03009
]
Eukaryotic type
Pre-60S particles
Helicases
120516115
Chromosome and associated proteins [BR:
psex03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
120516115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
120516115
NCBI-ProteinID:
XP_039593510
LinkDB
All DBs
Position
1:326661995..326704330
Genome browser
AA seq
764 aa
AA seq
DB search
MRCPGGARFSVQFRGTEHAQYAGTAVVVFPDVSTSSEQATSFLILWRRRKGLLSAFGLLS
SGKMPGKIYFDIDNMDTEEVLEVNSSEQNQQKKSKKEKKSKDEKKSKKQDPDEECEPPKP
KKKKRDPEAINGDVGSSQKLQEPTNSKVVCDPISNGTSKMKLISHSSEESGPEGDSDAEV
KEETPEQKEGAFSNFRISQETVNLLKERGVTYLFDIQAKTFNYVYDGSDVIAQARTGTGK
TFSFAIPLIEKLQSDALERKRGRAPKVLVLTPTRELAIQVAKDFKDITRKLAIACFYGGT
PYNPQIDAIRSGIDILVGTPGRIKDHLQNNKLDLAKLKHVVLDEVDQMLDMGFAEQVEEI
LLSAYKKGSDDNPQTLLFSATCPNWVYDVAKTYMRPQFEQVDLIGKKTKKTATTVEHLAI
ECHWSQRAAVIGDVIQVYSGSHGRTIIFCETKKEANELAINSSIKQDTQSLHGDIPQKQR
EITLKGFRNGSFEVLVATNVAARGLDIPEVDLVIQCSPPKDVESYIHRSGRTGRAGRTGV
CICFYQRKEEDQLRFVETRAGITFKRVGVPTANDIIRASSKDAVRFLDAVPPSAVGYFRA
AAEKLIEERGAVEALAAALAHISGAKSIEQRSLLSSDVGFVTMTMMCSVEMHNIGYAWRG
LREQLGEDVDSKIHRMKFLKGKTGVCFDVPAASVKTIQESWKDSRRWQLSVATELPELEE
VKRSGDRPSSGFGKRSFYGGGKRNDRFNNNRGQQKRSFGRAFAY
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgcgctgtccaggtggtgcgcgcttcagtgtacagttcaggggcacagagcatgcgcaa
tatgcagggacggctgtcgtcgttttcccggatgtaagcacgtcgtccgaacaagcaact
tcctttctaattttgtggcggagacggaagggtctcttgtccgcctttgggttgctctct
tcgggtaaaatgccaggaaagatctactttgacattgacaacatggatacggaagaagtt
ttggaagttaacagctcagaacagaaccaacagaagaaatcaaaaaaggaaaaaaagtct
aaggatgaaaagaaatcgaaaaaacaagatcccgatgaagagtgtgagccaccaaaaccc
aaaaagaaaaagcgagacccagaagctatcaatggagatgtcgggtccagtcaaaaactc
caggaaccaacaaatagtaaagtggtttgtgaccccattagtaatggaacatcaaaaatg
aagttaatttcacattccagtgaagaatcgggccccgaaggtgacagtgacgcagaagtc
aaggaagaaactccagaacaaaaagagggtgctttttctaattttaggatttctcaagaa
actgtaaatcttttgaaagagaggggcgtaacatatttgtttgatattcaggccaaaacc
tttaactatgtgtatgatgggagtgatgtgatcgctcaagctcgcacaggaactgggaaa
accttttcctttgctattcctctgattgaaaaactccagtctgatgccttggaaagaaaa
agggggagggccccaaaggttttggttctcaccccaacaagagagctggctattcaagta
gcaaaagatttcaaagatataaccagaaaactggcaatagcatgcttttatggcggaact
ccttacaaccctcaaattgacgctatacggagtggaattgatatcttggtgggcactcct
ggtcgtattaaagaccaccttcagaataacaaattagacctggcaaagttaaagcatgtg
gtgctggatgaagttgatcagatgctggacatgggctttgctgagcaggttgaggagatt
ttgttgtctgcctacaaaaaaggttctgatgacaatccacagaccctgctcttctcagct
acatgccctaactgggtatatgatgttgctaagacatacatgaggccacaatttgagcaa
gtggatcttattgggaaaaagactaaaaaaaccgcaacaactgtggaacaccttgcaatt
gaatgtcattggtctcaacgagcagcagtaattggggatgtcattcaagtatacagtgga
agccacggacgtaccattatcttctgtgagacaaagaaggaagcaaatgaattggccatc
aactcctcaattaagcaggatacccagtctttgcatggagacattccacagaagcagaga
gaaattacactaaagggattcagaaatggctcttttgaggtcctggttgctacaaatgtt
gcagctcgtgggctagacattccagaggttgatttagtcattcagtgctcaccacccaag
gatgttgagtcatacattcaccgatctggtcgcacaggcagagccggacgcactggagtc
tgtatctgcttttaccagcgcaaggaggaagaccagctgcgatttgtggagacaagagct
ggaataacattcaagcgagtgggtgtcccaactgcaaatgatattatcagagcttccagc
aaagatgctgtcagatttctagatgccgttcccccctctgcagttggttattttcgagca
gcagccgaaaaattgatagaggagagaggggctgttgaagccttagcagctgctctagca
cacatttctggagctaaatctattgaacagcgttctttgcttagttctgatgtgggcttt
gtaacaatgactatgatgtgttcagtggaaatgcacaacattgggtatgcttggaggggc
cttagggaacagctgggtgaagacgttgattcgaagattcatagaatgaagttcttaaag
ggcaagactggagtctgctttgatgttccagctgccagtgtgaagaccattcaggaatct
tggaaagactcgaggcgttggcagctgtctgttgcaactgagcttcctgagctagaagaa
gtgaagcgtagtggagacagaccttcatccggttttggcaagagatctttctatggtggt
ggaaagagaaatgaccggtttaataacaacagaggacaacagaagagaagctttggcaga
gcttttgcctactaa
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