Polypterus senegalus (gray bichir): 120516200
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Entry
120516200 CDS
T08668
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120516200 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psex03021
]
120516200 (smarcc1a)
03036 Chromosome and associated proteins [BR:
psex03036
]
120516200 (smarcc1a)
Transcription machinery [BR:
psex03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120516200 (smarcc1a)
Chromosome and associated proteins [BR:
psex03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120516200 (smarcc1a)
PBAF complex
120516200 (smarcc1a)
GBAF(ncBAF) complex
120516200 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
BRCT
HEAT_GCN1
BRCT_2
DUF919
Motif
Other DBs
NCBI-GeneID:
120516200
NCBI-ProteinID:
XP_039593647
LinkDB
All DBs
Position
15:105235183..105346310
Genome browser
AA seq
1105 aa
AA seq
DB search
MATAATAAGGTGSGGSTPSGGQTSGGTSALGAVRKKDGGPVAKFWESSETVSQMESVRVW
IGKHYRKYVHTDTPTNKSLAGLVVQLLQFQEDSFGKRVSNPALTKLPAKCFLDFKAGGAL
CHILGAAYKFKSEQGWRRFDLQNPSRMDRNVEMFMTIEKTLVQNNCLTRPVVYLMSDIEQ
KQASKLKDIIKRHQGTITDDKSKATHHIYPVSASLEEEEWFRSVMRKDKQVLVHWGMYPD
SYDTWVPASEVDCEVEDTPNPERPWKVNSKWVLDTDSFNEWMNEEDYEVDENKKSSSRTP
DRKERKAAASGKKRRRSPTPPPTPVESRKKGNKKGQPTPYGKRRSQREEEEQEDLTKDME
DPTPVPNMEEVILPKNVNPKKDSENTPVKGGTVADLDEQDDDSVVTGAKQQDEEEQGKVE
LNRLIDSSEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKSKTPEIYLAY
RNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLINYQVDTDSRPLPMGP
PPTPHFNVLADTPSGLVPLHHRAPQVPASQQMLNFPEKAKEKPTDLQNFGLRTDIYSKKT
LNKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPY
LENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVAAAAAKAALEEFSRVREEVP
AELVEAHVKKVQEAAKTTGKVDPAFGLESSGIAGTAPEEPEKNGILSISKTALNSLVKNC
TAVSPKHLHASTEISDPEKMETESDGPESEKAESKEDAEKPSDPSEKPQERLKNEQPESE
KEDADAPDESTTGTEKDKEEEKENLDTSRDSDWESGKKKLEPELEEGNIATAAAAALASA
ATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLT
ERQAFHMEQLKYAEMKARQQMEQQQAAAAQNAGGVHPPMPGMMGHQQQPSGYPMMHHPIG
SHHPGQPGLMGGPMGPNQPMPGRGMPSIPPGAPPHPPQSSLPPMMGPRHPGAPNGMYPTP
PPQPDGISPAHIGPPSTAPPRPAEN
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggctacagcagctgggggaacgggttcggggggttcgacaccgtcagga
ggacaaacgagcggcggcacttcagctctgggagccgtcaggaagaaagatggtgggccg
gtggccaagttttgggaaagctcggaaaccgtttctcaaatggagtcggtgcgagtttgg
atcgggaagcactatcgaaagtacgtccacactgatactcctaccaacaagtcgctggca
ggtttggttgtacaactgttgcaattccaagaggattcctttgggaaacgtgttagcaac
ccagcacttaccaaattgcctgccaagtgcttccttgacttcaaagctggtggtgccttg
tgccacatacttggagctgcttacaaattcaaaagtgaacagggttggcgaagatttgac
ttgcagaacccatccaggatggatagaaatgttgagatgttcatgacaattgagaaaact
cttgttcagaataactgcctaaccaggcctgttgtctacctaatgtcagatattgaacag
aaacaagctagtaaactcaaggacataatcaagcgacaccagggtaccattacagatgat
aagtcaaaggctactcatcatatttatcctgtttcagcatcgctagaggaagaagagtgg
tttcgttcagtgatgcggaaggacaagcaggtgctggttcactggggaatgtaccctgac
agctatgatacttgggttcctgccagtgaggttgattgtgaagtagaagacaccccaaac
cctgaacgaccttggaaagttaattccaagtgggttcttgacacagattcttttaatgaa
tggatgaatgaggaagattatgaagtggatgaaaacaagaagtcttcttcacgcactcct
gatcggaaagaaaggaaagcagctgctagtggaaagaagagaaggagatctcctactccc
ccaccaaccccagtagaatcccggaaaaagggaaacaagaaaggtcagccaactccctat
ggaaaacgccgtagccagcgagaggaggaggaacaggaagatttgacaaaagatatggaa
gatcctaccccggtgcccaatatggaagaggtcattctccctaagaatgtgaaccctaaa
aaggatagtgaaaacacaccagttaaagggggaacagtggcagatttagatgaacaagat
gatgactctgtggttactggagccaaacaacaagatgaggaagaacaaggaaaggttgaa
ctgaatcggctgatagactctagtgaagataatgttacagaacagacccatcacatcatc
attcccagttatgctgcctggtttgactataactgcatacatgaaattgaaagacgagcg
ttaccagagttctttaatggaaagaacaagtcaaagaccccagagatatacctggcttac
cggaatttcatgattgatacctatcgtctaaacccccaggaatatcttactagcacttcc
tgccgacgaaacctcactggagatgtgtgtgcagtaatgagggtccatgcattcttggaa
caatggggactaatcaactaccaggtggatactgacagtcgtcctctcccaatgggtccc
ccacctacacctcattttaatgtgctagcggacacaccatcaggtttagtaccacttcac
catcgagcaccacaggtccctgcatcacagcaaatgttaaactttcctgagaaagcaaaa
gagaagcctacagacctgcagaactttggattacgcacagatatatactccaagaaaact
ctgaacaagagtaaaggagccagtgctggacgtgagtggactgaacaggaaactttactt
ttactggaggctcttgagatgtacaaggatgactggaacaaggtatctgagcatgttggc
agccgcacacaggatgagtgcattctgcacttcctgaggcttcctattgaagacccctat
ctagaaaattcagatgcttccctgggacccctagcctaccagcctgtacctttcagtcag
tcaggaaaccctgtgatgagcaccgtagccttccttgcttctgtagtggacccacgtgtg
gcagccgccgctgcaaaagctgcacttgaggagttttctcgggtgcgtgaagaagttcct
gcagagctggtagaggctcatgtgaagaaggtgcaggaagctgcaaagaccacaggcaag
gtggacccagcatttggactagagagcagtgggattgcgggtactgcccctgaagagcca
gaaaaaaatggcatcctctcaatttccaaaactgcattaaacagtctggttaaaaactgc
actgctgtctctcctaaacacctccatgcttcaacagaaatctcagatcctgaaaaaatg
gaaactgaatcagacggaccagaatctgaaaaggcagaaagcaaggaagatgcagaaaag
ccaagtgatccgtcagagaagccacaagaacgtcttaagaacgagcagccagagtctgag
aaagaggatgcagatgcaccagatgagagtacaacaggtacagagaaagataaagaggaa
gaaaaagagaatttggatacaagcagggacagtgattgggagtctggtaagaagaaactg
gagcctgaattagaggagggaaatattgccacagctgctgctgctgctcttgcttcagca
gccactaaagccaagcatttggctgcagtggaggaacggaagataaagtctcttgtagct
ttgcttgtggagactcagatgaagaaacttgagatcaagttgagacactttgaagaactg
gaaacgatcatggatagggaaaaagaagcgttggagcagcagagacagcagctgctgaca
gagaggcaagcattccacatggagcagctaaagtatgcagagatgaaggcccgccagcaa
atggagcagcagcaggcagcagctgcacaaaatgcaggtggagtacatccgcctatgcca
ggaatgatgggccaccagcaacagccatctggctacccaatgatgcaccatccaatagga
tctcaccaccctggccaaccaggcttaatgggtggaccaatgggaccaaatcagcctatg
cctggtagggggatgcccagcattcctcctggtgcaccacctcacccaccacagtccagt
ctgcctccaatgatgggtcctcggcaccctggtgcaccaaatggaatgtatcccactcca
ccaccacagcctgatgggatttctccagctcacataggacctccatctactgcccctcca
agacctgctgaaaattag
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integrated database retrieval system
