Polypterus senegalus (gray bichir): 120516998
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Entry
120516998 CDS
T08668
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120516998 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120516998 (hbs1l)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120516998 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
120516998
NCBI-ProteinID:
XP_039594980
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Position
16:complement(95447062..95581247)
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AA seq
733 aa
AA seq
DB search
MASALLSGNPRAKRLSGREDGDGRLRPECFGFFCPLNFCLRKGDFEDDDVYGQSVEDDYC
ISPATAAEFIYSRRDKPSSFTEPLEEEEFEEEESSLEFVSQHQDKLSGFDQARLYSCLDN
MREVLGDSIPDPILVNAALQSNFDPQKALDAVLTEGGQKSSARNQDSASAEKSAKGCLVE
HVVSIKSDNIMGIQGRTRDAPLSKPDTEIVPKVARMTVSGKKQTMGFDVPSSEENGQLGA
FRKGPLTEDTASMSILTEPQSKANVSPPPAQNLTEELPGQPTPTKTASKNKQQINVKAEL
EKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQESKKAGKASFAYAW
VLDETGEERDRGVTMDVGMTKFETKTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDA
SRGEFEAGFESGGQTREHGLLVRSLGVTQLVVAVNKMDQVNWQQDRFQEISTKLGQFLKQ
AGFKESDVSYVPTSGLSGENLTSKSKEPELLKWYKGSCLLEQIDCFKPPQRPVDKPFRLC
VSDVFKDQGSGFCITGKIEAGYVQTGDRILAMPPNETCTVKGISLHDEPIDWAAAGDHVS
LTVTGMDIIKINVGCVFCDPKEPIKVCTRFQARILLFNIEVPITKGFPVLLHFQTVTEPA
TIRKLVSILHKSTGEVLKKKPKCLTKGQNALIEIQTQRPVALELYKDFKELGRFMLRYVG
STIAAGVVTEIKE
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgcgctgctttctgggaaccctcgcgccaagaggttgtcgggacgtgaagat
ggcgacgggagactgaggccagagtgttttggttttttttgccctcttaatttctgtctg
aggaagggcgattttgaagatgatgatgtttatgggcagtcagttgaagatgattactgc
atttcacctgctacagctgctgaatttatctactccagacgtgacaaaccatcttcattc
actgaacccttggaggaggaagaatttgaggaagaggagtcttccttggagtttgtgtca
cagcatcaagacaagcttagtggatttgatcaagctcgactgtattcatgccttgacaat
atgcgagaagtccttggtgactctatcccggatcctattcttgtgaatgcagctcttcag
tccaactttgacccacaaaaagctttggacgctgtacttacagaaggtgggcagaagtca
agtgcccgaaaccaagacagcgcctcagcagagaagtctgccaaaggctgtctggttgaa
catgtagtttctattaaatcggacaacattatgggaatacaaggaagaacaagagatgct
cctttgagtaagccggatacagaaattgtgccaaaagttgctagaatgactgtgtctgga
aaaaagcaaacaatgggctttgatgttccaagctcagaagaaaatggtcagttgggagca
tttcgcaaagggccattgacggaagatactgcctcaatgtccatccttacagagccacaa
tccaaagcaaatgtttccccaccacctgcccaaaatctcactgaggaactccctggtcag
cctacgcctacaaaaacagccagcaaaaacaagcaacaaattaatgtcaaagcagaacta
gagaagagacaaggaggaaagccactattaaaccttgttgttatcggacatgtggatgct
gggaaaagcactttaatgggtcacctcttgtatttgttgggtaatgttaacaaaagaaca
atgcacaagtatgaacaagaatctaagaaagcagggaaagcctcctttgcatacgcttgg
gttttggatgagactggtgaagagagagacaggggtgtaactatggatgttggaatgaca
aagtttgaaaccaagactaaagtgataacactaatggatgcaccaggacataaagacttc
attcccaatatgataactggagctgctcaggctgatgtggcagtacttgtggtcgatgcc
agccgtggggagtttgaagctggtttcgagtcagggggacagacgagggaacatggtcta
cttgttcgatctcttggtgtcacccagctggtagttgctgtcaacaaaatggatcaggtg
aattggcagcaggacaggtttcaggaaatttccacaaagcttgggcagttcttgaagcaa
gctggcttcaaggagtcggatgtgtcttatgttcctaccagcggtctatcaggagagaat
ttaacatctaagagcaaagaacctgaactcctcaaatggtacaaaggatcctgtctttta
gagcagattgattgcttcaagcctccacaaagacctgtggataaaccatttagattgtgt
gtttccgatgtatttaaagatcaagggtctggcttctgcataacaggcaagatcgaagca
ggttatgtgcaaactggagatcgaattttagcaatgccgcctaatgaaacctgcactgta
aaaggaatttcattacatgatgagccaatcgactgggcagcagccggagatcatgttagt
ctcactgtgactggcatggatataatcaaaatcaatgttgggtgtgtattttgtgatcct
aaagaacccattaaagtatgtactcgattccaagcaaggattcttctgttcaatatagaa
gttcccataacaaaaggatttcctgtgttactgcattttcaaactgtcactgaacctgca
accataagaaaattagtaagcatccttcacaaaagtactggagaagtgctgaagaaaaaa
ccaaaatgcctgactaaagggcagaatgcattgatagaaattcagacccaaagaccagtt
gcacttgaactttataaagatttcaaagaactgggtcgcttcatgctacgttacgttgga
tccaccattgctgcaggtgttgtcacagagatcaaggagtga
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