Polypterus senegalus (gray bichir): 120517134
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Entry
120517134 CDS
T08668
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120517134 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psex03041
]
120517134 (ddx5)
03009 Ribosome biogenesis [BR:
psex03009
]
120517134 (ddx5)
Enzymes [BR:
psex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120517134 (ddx5)
Spliceosome [BR:
psex03041
]
Complex A
U1 snRNP components
U1 related factors
120517134 (ddx5)
Complex B
120517134 (ddx5)
Ribosome biogenesis [BR:
psex03009
]
Eukaryotic type
Pre-60S particles
Helicases
120517134 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120517134
NCBI-ProteinID:
XP_039595214
LinkDB
All DBs
Position
17:complement(82645064..82650455)
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AA seq
613 aa
AA seq
DB search
MPGFSDRDRGRDRSFGGGPRFGGSRGGPTQGKKFGNPGERLRKKHWNLDELPKFEKNFYQ
EHPDVARRTPQEVEQFRRSKEVTVRSRDCPNPIVKFHEASFPSYVMDVISKQNFSDPTPI
QSQGWPVALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLSHGDGPICLVLAPTRELA
QQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLR
RCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLKEYIQI
NIGALQLSANHNILQIVDVCNDGEKDDKLLRLLEEIMSEKENKTIIFVETKRRCDDLTRR
MRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINYDYPN
SSEDYIHRIGRTARSSKTGTAYTFFTPGNMKQANDLISVLREANQAINPKLMQMVEDRGG
RSRGRGGFKDDRRDRYSSGRRDFGGYRDRDNDRGFGAKKVFGNKAQNGGYAGGYDGANGY
ANGYTNNGQANYPVANQAMQYGNQNFQNAQFTPNGQAAVQNGMSHQPFPFTPQNPPQQPQ
QMVNYAIAPAYSQ
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgcccggattttcggatagagatcgtggaagagaccgcagctttggtggtgggccccgt
tttggtggtagtagaggtgggcctactcaaggcaagaagtttggcaaccccggagaacga
ctccgtaagaaacattggaacttggatgagctgccgaaatttgaaaagaatttctaccag
gagcatcctgatgtggctcgaaggacaccgcaagaggtagagcaattcagaagaagcaaa
gaagttacagtgagaagcagagattgtccaaacccaatagtgaagttccatgaagcaagt
ttcccatcatatgtgatggatgtaatttcgaagcagaacttctctgatcccacacccatt
caatcacaaggctggcctgtagcacttagtggtagagacatggtgggaattgcacaaaca
ggatccggaaaaacccttgcgtacttgctgccagctattgtgcatattaaccatcagccc
tacctgagccatggtgatggaccaatttgcttggttcttgctcctacacgtgaacttgca
caacaagtgcagcaggtggctgctgaatatggacgagcgtcccgattgaagtccacatgt
atatatgggggtgccccgaaaggtccacagatacgtgacctggagagaggagtggaaatc
tgtattgcaacacctggccgtttgatagatttcttggaagctggaaagacaaatttgcga
cgatgcacttaccttgttttggatgaagcagacagaatgctagatatggggtttgaacca
cagatcagaaagattgtagagcagattaggcctgatcggcaaaccctcatgtggagtgct
acatggcctaaggaagtaagacagctggctgaagatttcctgaaggagtatattcagatc
aatattggtgctttacagctgagtgctaaccataacattctgcagattgtggatgtgtgc
aatgatggagaaaaagatgacaaattgcttcgattattagaagaaataatgagtgagaag
gaaaacaagaccattatttttgttgagaccaagagacgttgtgatgacctaacaagacga
atgagaagagatggttggccagcaatgggtattcatggtgataagagccagcaggaacgt
gattgggttctcaatgagttcaagtttggtaaagctccaatcctcattgccacagatgtt
gcttccagaggtttagatgtggaagatgtgaaatttgtcatcaattatgattaccctaat
tcttctgaggactatattcatcgcattggacgaactgcccgaagtagcaaaacgggcact
gcatataccttctttactcctgggaacatgaaacaggcaaacgacctcatatctgtgctt
cgtgaagccaaccaagcaatcaaccctaagctcatgcagatggttgaagacagaggaggt
cgttccaggggtagaggtggatttaaagatgaccgtcgtgatagatattctagtggcagg
agagattttggaggctatagggaccgggataatgaccgtggctttggcgcaaagaaggtc
tttggtaataaggcacagaatggtggctacgctggaggttatgatggtgccaatggttat
gccaatgggtacacaaacaatggacaagcaaactatcctgttgcaaaccaagccatgcag
tatggtaaccagaactttcagaatgcacagtttacacctaatgggcaggcagctgtgcaa
aatggcatgagccatcaaccgtttccttttactccacagaaccctccccagcagccacaa
caaatggtgaattacgccatagctccagcatattcccaatga
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