Polypterus senegalus (gray bichir): 120517158
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Entry
120517158 CDS
T08668
Symbol
helz
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120517158 (helz)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
120517158 (helz)
3'-5' decay
Other 3'-5' decay factors
120517158 (helz)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
AAA_19
zf-CCCH
ResIII
UvrD-helicase
PAM2
zf_CCCH_4
PhoH
AAA_16
AAA_7
AAA_5
AAA_22
zf-CCCH_4
Mov-10_helical
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
120517158
NCBI-ProteinID:
XP_039595251
LinkDB
All DBs
Position
17:complement(83444979..83540139)
Genome browser
AA seq
1906 aa
AA seq
DB search
MADRRPEKSCEQACESLRKQEYEAAARHCTEALLSLSHIHSSSSVAFQQSSDFARNKALL
CRIAALLQLKNYDQADEDCRHVLAEELAKGDGSFQAVLRCMFLEGSLQDVHNILTKSLLK
EPLNGMVTKDLSRLKMLLAEIEAASNVITSGYVEETEEDIEDGWQFRPPPRGVTSSEEYT
LCKRFLEQGLCRYGAQCTSAHSTQELAEWQKRYASRLIRLKQEQEGKQLTGNYMEMLIEK
WMNSLTPERVLSEYLEGVTVEPTPELSVTVTAKKSYQNWTFSLFCKPARTLYRIALLYDA
HRPHFFITTVSVGDATKQVLQDVPDNCQEWIGGEGTENGLDHCIYKVVVAFSTEIFGTFR
QTIVFDFGTEPVLMQRIMVDAASIEDLEHLRQARQQLLITAKRWDSSCKTIVEFEPNETT
ELERSLLMRYHIPLSADQLFTQSVLDKMLTKDNYQSRLHDLLYIEEIAQYKEVSKFNIKV
HLQLLSSFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNSVLLLPLTKE
KPVQSPGAKEKVYEAVIEEKTKDYIFLRMCKDCCEELKLRPDREVQVELQFQLNRLPLCE
MHFALDRIKDTDILFPDTSLIPTIPWSPNRQWDEQLDPRLNAKQKEAILAITTPLTIQLP
PVLLIGPYGTGKTFTLAQAVKHILKQNDTRVLICTHSNSAADLYIKDYLHPYVEAGNIHA
KPLRVYFRNRWVKTVHPIVQKYCLISNTQFTFQMPQKEDIESHRVVVVTLSTSQYLCQLD
LESGLFTHVLLDEAAQAMECETIMPFALASKATRIVLAGDHMQLSPFVYSEFARERNLHM
SLLDRLYEHYPAEYPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKEFHPLTF
FTARGEDVQEKNSTAYYNNAEVFEIVERVEELRKKWPVAWGKLDDGSIGVVTPYADQVFR
IRAELRKKRMSDVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEHMQEDSTED
LDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEQFITICHENGSLHGITL
QQIRAQLEALELKKTYVLNPLAPEFIPRALRQPGAGNGNKQAQPSPPKGKGQHQNQNDHF
QAESFAQPSSSVLIGNPIRAFTPPLGTSASIGNSPSPVQRIDPHTGTSILYVPAVYGGNM
VMPVPVPVPWAGYQGRFAMDPRIMTHQAAVAYNMNLLQAHGRGSPIPYAAGHPSPVGLNQ
QQEKETQEPTRNGKPEGNVKGEQNRLQTPERKLSSSKEKQEDSEAGQNKSPESQSSLGFS
SARFHRKDNPGQRPMNFHLAPPSHPFPPHPSRPHQFPHQLPVPRQPFRAPGQVPPLPPQH
SPLSPGMSSVHNPSFFTTPLSARSVHSPGVETTTPEQGAPSLMQEEIGNQMRPVQQTPNH
LSSFVEDNSESSLGEALDVPAVATLEGLSQQTRLNHWSEHNHFLQSGMTFPLHLSQQPFR
FPQQLLRGNWRVAGAGEEEVTPGYPRFPGLLREIPPQEQAELRDQSEMPPPQSRLLQYRQ
VQPRSLGSLQPVPHNHGTHFPGGSGDVSQELEMINSQGFSSHQAPVFNPAFPIPSGRTTP
PMMKYVMPDAPWTHPALHQNHMLGQAFHYGVPQLAHRPDQVHLLQIQQHQQQPQQSLPPP
PPLHQVSSQETFHPLSPPTVSASSLQNIEEYEPRGPGRPLYQRRISSSSAQMYPEESGPP
PSNLVQCKELQDHSNHLSFNYSSPEPWANASSVPFQNIPCNGATRLVFQRELLASSSKAL
RPAEECAKVESVQQLPSSFNCNTLQHHSQFPPLMPNKQATSEPCIGSNSSTTNKPPTMSY
ASALRAPPKPRPLPEQAKKSSDPLSLLQELSIGSSTGSNGYYSYFK
NT seq
5721 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaggaggccagaaaagtcctgtgaacaagcatgtgaatcgttgcgaaagcag
gagtacgaggcagcagcgaggcactgcactgaggccctcctctccctcagccatatccac
tcgagctccagcgtggcgttccagcagagcagtgattttgcccgcaataaggccctgctc
tgtaggatagcagcgcttctgcagttgaaaaactatgatcaagctgatgaggactgcaga
catgtgctcgcggaggagttggccaagggagatgggtcctttcaggcagtgcttcgctgc
atgtttctggaaggcagcttgcaggatgtacacaatatccttaccaagtctctgttgaag
gaacctttgaatggaatggtgaccaaggacttgtccagactgaaaatgctgcttgctgag
atagaggcagcaagtaatgtgataacctcaggatatgtggaagaaacagaggaagatatt
gaggatggatggcagtttcgaccaccccctcgtggagttactagcagcgaggagtacacc
ctttgcaaaaggtttttggaacagggtctttgccgctatggggcacagtgcacctcagcc
cactcaacgcaggagcttgcagaatggcagaagcggtatgcttcacgtttgattcgcctg
aaacaggagcaggaaggaaagcagctcacgggaaactacatggagatgctcatcgagaag
tggatgaattccctgactcccgagagagtgcttagtgaatatttagaaggagtaactgtg
gagcccaccccagagctgtctgtcacagtaactgccaaaaaatcataccagaattggaca
ttctcacttttttgtaagcctgcaagaacactgtatagaatagctcttttatatgatgct
caccggcctcatttctttatcacaactgtttctgtgggagatgcaaccaagcaggtgcta
caagacgtcccagacaactgccaggagtggattggtggtgaaggcacagagaatggactt
gatcactgcatttataaagtggtggttgcatttagcactgaaatatttgggacatttcgg
cagacaattgtctttgatttcggtactgagcctgtactgatgcaaagaatcatggtggat
gctgcttcaattgaagatctagaacatttgagacaagcccgtcaacagctactcatcaca
gcaaaacggtgggactcctcatgcaaaacaatagttgaatttgaacccaatgagactact
gaattggagagaagccttctgatgcggtaccacatcccactttcagcagaccagctcttt
acacagagtgtcctagataaaatgttgaccaaggacaactaccaatccaggcttcatgac
ctcctttacattgaggagatagcccaatacaaggaagtcagcaagttcaacattaaggta
cacttgcaactcttgtcaagcttcatgctcactggggtctctggaggtgcaaagtatgct
cagaatggacaactctttggccgtttcaaactcacagagactctttctgaagacacttta
gctggaagactggtgatgaccaaagtcaattctgttttactactgccgcttacaaaggag
aagcctgtgcagtccccaggagccaaagagaaagtctatgaagctgtgatagaagagaag
accaaggattatattttcttacgaatgtgtaaggactgctgtgaggagctaaagttgcgc
cctgatcgggaagtgcaggttgaactccagttccagctaaatcgtttgccactttgtgaa
atgcatttcgcattggatagaatcaaggacactgatattctttttcctgatactagtttg
atacccaccatcccttggagtcccaacaggcagtgggatgagcagttggaccctcgacta
aatgccaagcaaaaagaagctattcttgctatcaccacaccactcactatccagctgcct
cctgttctcctcattggtccctatgggacaggcaagacattcactcttgctcaagcagtc
aaacatatactgaagcagaatgatactagagtcctcatttgcacccactccaacagtgct
gctgacttgtacataaaggattatcttcacccctatgtagaagcaggaaacattcatgct
aaacctctcagggtatacttcaggaatcgctgggtgaagactgtccaccccattgtgcaa
aagtactgcctcatttcaaatacacagttcactttccagatgccccagaaagaagatatt
gagagtcaccgggtggtggttgtcactttgagcacctcccagtatctctgccagttggac
ctggagtctggtctttttacacacgttctactggatgaagcggctcaagccatggagtgt
gaaaccattatgccgtttgctctggccagcaaagcaactcgtattgttttagcaggagac
cacatgcagctcagcccctttgtgtacagtgagtttgctagagagcggaacctgcacatg
tccctactggaccgtctgtatgagcactacccagctgagtacccatgcagaatcctgctc
tgtgagaattatcgctcccatgaagccattatcaattatacgtctgagctcttctacgaa
ggaaaactgatggccagtggtaagcagccagcgcacaaagagttccatcccttgaccttt
ttcacagcacggggagaagatgtacaggaaaagaacagtactgcctattacaacaatgct
gaggtgtttgagatagtggagcgggtggaagagctccgtaaaaagtggcctgttgcctgg
ggcaaactggatgatggaagcattggagtagtcacaccatatgcagatcaggtgtttcgc
atccgagctgaactaaggaaaaaaaggatgtctgatgttagtgttgaacgagttttaaat
gttcagggtaaacagttcagagtgctcttccttagcactgttcgcacacggcacacatgt
aaacataagcagacggccattaagaggaaggaacacatgcaagaagattcaacagaggat
cttgactatggttttctgtccaactacaagctgctcaacacagccatcacccgagcacag
tcactagttgcggttgtgggcgaccctattgcactctgctctgtaggacgttgcaggaag
ttctgggagcaattcattacaatctgccatgagaatggcagtttgcatggcatcacacta
cagcaaattcgtgctcagctggaggcactcgagctgaagaagacctatgtactcaatcct
ctggctcctgagttcattcctagggcactgcgacaaccaggcgctggaaatggcaacaaa
caggcacagccatcaccaccgaagggtaaaggacagcaccaaaaccagaacgatcatttt
caagctgagagctttgctcagcccagttcttcagttctaattggaaatccgatccgggca
tttactcccccactgggcacatctgccagcattggaaattccccaagcccagtacagcga
attgatcctcacactggcaccagtattctatatgtacctgctgtctatggaggcaatatg
gtcatgcctgtccctgtgccggtcccttgggctggctatcaggggcgatttgctatggat
cctcgcatcatgacacatcaagctgctgtggcatataacatgaatctcctacaagctcat
ggacgtggatcacctatcccatatgctgctggacacccttcaccagtgggcctgaatcag
caacaggaaaaggaaacccaggaaccaactagaaatggcaaacctgaaggaaatgtgaaa
ggagagcaaaatagattgcagacccctgagaggaagctttcaagctccaaagagaaacag
gaagattctgaagcaggacaaaataagagcccagaatcccaatccagcttaggtttctcc
agtgcacgattccatcgcaaagacaatcctggccagaggccaatgaactttcacctggca
cctcccagccacccatttcctcctcacccaagtcgcccacatcaattcccacatcagctt
cctgtccctcgtcagccctttagggcaccaggacaagtgccccctcttcctccacagcat
tcacctctctcaccgggaatgtcaagcgtgcacaacccgtctttcttcaccactcctttg
tctgctcgcagtgtacactctcctggtgtcgaaaccacaacaccagagcaaggggctcca
tctctaatgcaggaagagattgggaatcaaatgagaccagttcagcagacacccaatcat
ttgagcagctttgtggaagacaactcagagtcatccctgggagaggcattggatgtgcca
gctgttgccactctggaagggttgagtcaacagacacgtttgaaccactggagcgagcac
aatcacttcttgcagagtggcatgaccttccctctgcacctgtctcagcagcctttccgt
tttccgcagcagctccttagagggaactggagggtggctggtgccggtgaagaagaggtt
acaccaggctatcctaggtttccaggcctgcttcgagagataccacctcaagaacaggct
gagcttcgagaccagtcagagatgcctccacctcagtcacgcttgttacagtaccggcaa
gttcagcctcggagtcttggatccctccagcctgtaccacacaatcacggaacacatttt
ccaggtggcagtggggatgtcagccaggagcttgaaatgatcaacagtcaggggttttca
tcacatcaagcaccggtgtttaacccagcttttccaatcccttctggacgcactacaccc
ccaatgatgaagtatgtgatgcccgatgcaccatggacgcacccagctctccaccaaaac
cacatgttgggtcaggcctttcattatggtgtgccacagttggctcaccggcctgatcag
gtgcacttactacagatccagcagcatcagcagcagccgcagcagtcattgccacctcct
cccccgcttcatcaagtcagcagccaggaaacgtttcacccattatcccctccaactgtt
tctgcttcctcactccagaatatagaagagtatgagccccgaggaccaggcaggccgctt
taccaaagaagaatctcttctagctcagcacagatgtaccctgaagagtcaggccctccc
cccagcaatcttgttcagtgtaaggagcttcaggaccatagtaaccatctttcattcaac
tactcgtctccagagccatgggcgaatgccagctctgtcccatttcagaacattccatgc
aatggagccaccagactagtttttcaaagggaacttttagcttcttcctcaaaggcacta
cgcccagctgaggagtgtgcaaaggtggaaagcgtccaacaactgcccagctccttcaac
tgtaataccctgcagcatcacagccagtttccaccactcatgcccaacaagcaggcaacc
tctgaaccctgtattggcagcaacagcagcactactaacaaaccccctacaatgtcatat
gccagcgccctgcgggcccccccaaaaccaaggcccctgcctgagcaggcaaagaaaagc
agtgaccccttgtcactgttacaggagctcagcatagggagttccacaggtagcaatgga
tattattcctattttaaataa
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integrated database retrieval system
