Polypterus senegalus (gray bichir): 120517170
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Entry
120517170 CDS
T08668
Symbol
utp18
Name
(RefSeq) U3 small nucleolar RNA-associated protein 18 homolog
KO
K14553
U3 small nucleolar RNA-associated protein 18
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120517170 (utp18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psex03009
]
120517170 (utp18)
Ribosome biogenesis [BR:
psex03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
120517170 (utp18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
WD40
WD40_CDC20-Fz
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_SPT8
KNTC1_N
NBCH_WD40
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Cytochrom_D1
Beta-prop_IFT122_1st
Beta-prop_Vps41
WDR90_beta-prop_4th
PD40
Beta-prop_IFT80_2nd
DUF7165
Pox_D5
Motif
Other DBs
NCBI-GeneID:
120517170
NCBI-ProteinID:
XP_039595266
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Position
17:100804726..100835354
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AA seq
520 aa
AA seq
DB search
MEGLQSAAKSKRGVAQKRGEQAADREAKVRRRHIKALGEKDESERYLEGLVFGAEDELIG
RLCGADKAHDTTTGDLLAEDSSDAEVEDESRLQVPSAKRAAWVDEDDEADEIIDMTHRYR
KDLLKSDAEKLLPKQKFKLRLKEQFQKAMGGTPAWAESNLKKKTKKTTKGEEDSDEDEDN
LLQRTGNYVAASDSLPRGIIEMKKCLNANNERPSDAKLTTVKFHPAAQVIMTAGFDQSIS
LFQVDGKTNPKIQSIHLEKFPVFKARFSADGEQVIATSMRNKMFYVYDMMGGKIIPVYGI
RGLEINRVKQFDVSPDGSFLLLTGRSGYLHLLTMKTKELVANMKINGNVGATAFSPDGSM
MYAHSDEGEVFIWDVKSRKCINKFTDDGCLRGTSIAASRNGQYVACGSSSGVVNVYTHDA
CLSKSNPKPLKAIMNLVTSATSLVFNPQTEILAIASDLADDAVKLVHIPSFTVFSNFPLF
RKKSIHLAQCMDFSPRSGFFSVASNKGKALLYRLKHYTNF
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggagggcttgcagtcagcggcgaagtcgaagagaggagtagcccagaaaagaggcgag
caggccgcggatcgggaagccaaggtgcgccgccgacacatcaaggcgctcggggagaag
gacgagagcgagcggtacctggaagggctggtgttcggggccgaagacgaactcatcgga
agactgtgcggagccgacaaggcacatgacaccacgaccggtgatctgctggccgaggac
tcgagtgacgccgaggtggaagatgagtcgcgccttcaagttccttctgctaagagggcc
gcctgggtggatgaggatgacgaggcagatgagatcatcgatatgacccatcgatatcgg
aaggacctgctgaagagcgatgcggagaagttacttccaaagcagaagtttaagctgaga
ctgaaggaacagtttcagaaagcaatgggaggaacgccagcctgggcagagagcaacctg
aagaagaaaacgaagaagacgacgaagggcgaggaggacagtgatgaagatgaagataat
ttactacaaaggacaggaaactatgtggcagcttcggattcccttcccagaggcatcatt
gagatgaaaaaatgcctcaatgccaacaatgaacgcccgtcggatgccaagctgaccaca
gtgaagtttcatcctgccgcacaagtcataatgacggctggttttgaccagtctatttca
ctctttcaggtagatggcaaaacaaatccaaaaattcagagtatccacttggagaagttt
cctgtcttcaaggctcgtttcagtgctgacggcgagcaggttattgcaaccagcatgcgt
aataaaatgttttacgtgtacgacatgatgggagggaagataatcccagtctacggcatc
cgaggattagaaataaaccgagtaaagcagtttgacgtttcccctgacggctcgtttctc
ctcctcactggaaggtctggatatctccacctgctgaccatgaagacaaaggaacttgtt
gccaacatgaagataaatggaaatgttggagccacagctttttctccagatggcagcatg
atgtacgctcattctgatgagggtgaagtatttatctgggacgtaaaaagcagaaaatgc
atcaataagtttacagacgatggttgcttgaggggaaccagtattgctgcctctcggaat
gggcagtatgtggcatgtgggtccagttcaggagtggtgaatgtctacactcatgatgct
tgtctgagtaaaagcaaccccaagcccctgaaggccataatgaacttggtgacatcggcg
acatctttggtttttaacccgcagactgaaattctggccatcgcgtccgatctggcagat
gatgcagtcaaactggtacacattcccagtttcacggtgttctctaatttccccttattt
cggaagaagtcaattcacctggcgcagtgcatggacttttctccacggagtggatttttc
tctgttgcatcgaacaagggcaaagctttactctacaggttaaaacattacaccaatttc
tag
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