Polypterus senegalus (gray bichir): 120517486
Help
Entry
120517486 CDS
T08668
Symbol
rag1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
120517486 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psex04121
]
120517486 (rag1)
Enzymes [BR:
psex01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120517486 (rag1)
Ubiquitin system [BR:
psex04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120517486 (rag1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAG1
RAG1_imp_bd
zf-RAG1
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_UBOX
zf-C3HC4_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
120517486
NCBI-ProteinID:
XP_039595773
LinkDB
All DBs
Position
1:6686476..6728469
Genome browser
AA seq
1161 aa
AA seq
DB search
MRTSREGPSSAEAEENPAAWKVDTTPEPTSGSVVGTADLPYGEAEGGSIKGPIGAENVGP
AEKTSRGAASGFLQFSSFFQVTVLAVRMAECLLSKVGRDSNRNARCAPVTTSEKTPSLAG
MAAQMADTTWRPVPSEIQHPYSKFSDWKFKLFRIKSIERAPLCPEKENQPPDVTESESPK
DADMLNERPGLAGVMKLCLGGKSKESIQKNSLDLKLAEIDAHMNNLRMLCRLCGSTLKKY
QANFEYEVQGLLDTMSREKLRKMGCRASSWPEVILKVFKVDVTSDLETVHPTFFCHSCWK
IAIRGGGFCCFSRIRIPQWRPHSVLCKLCFPRGSVKRKGTPQSLHLMKKAKVEMKEQKRR
RNAKDEGQPKHWSKLQRQRNLWVKTITRCKKTHLSSSLLTADYPVDFVHSISCQICGHIV
ADPIQNSCKHLFCRSCILKYTQVMGSHCPVCRVACCSSNLVPPAKSFLNILQSLHIRCPS
EDCGEQVKLEDYGPHTLSHREFKANEAYSPINKGGRPRQHLLSLTRRAQKHRLRELKHQV
KMFAEKEEGGDIKSVCLTMFLLALRAGNEHRKADELEAIMQGRGSGLHPAVCLAIRVNTF
LSCSQYHKMYRTVKATSGRQIFQPLHALRNAEKALLPGYHPYEWQPSLKNVSSNTEVGII
DGLSGWKASVDDAQMDTIARRFRYDVAVVAALKDLEEDILEGIKEHELDDSSTEIFTVTV
KESCDGMGDVSEKHGGGPALPEKAVRYSFTIMSIATRDEEGNNVMIFQESKPNSELCCKP
LCLMFADESDHETLTAILGPVVAEREAMKESRLILDIGGLSRCFRFIFRGTGYDEKLVRE
LEGLEASGSTYICTLCDSTRVEASRNMILHTITRSHEENLERYEIWRSNPFSESADDLRD
RVKGVSAKPFMETHPSIDALHCDIGNAAEFYKIFQDEIGEVFQNPNPPKEERKRWQSALD
KQLRKKMNLKPIMRMNGNFARKLITSEAVEAVCELVPSEERKEALRELVNLYLQMKPVWR
STCPLKECPDLLCRYSFNSQRFAELLSSTFSYRYDGKITNYLHKTLAHVPEIIEKEGSIG
AWASEGNESGNKLFRRFRKMNARQSKCYELEDILKHHWLYTSKYLQKFMEAHKNSVKAIE
ATITPIETEDDPTDVIDSLEF
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgcgcacgtcccgcgaagggccgtcctctgcggaggcagaggaaaaccccgcagcgtgg
aaggtggacacgacgcctgagcccactagtggttccgtggtggggactgcggacttgccg
tatggagaagccgaaggagggagcatcaaggggccaatcggagcggagaacgtcggccca
gctgagaagacgagccgaggggctgcgtcaggatttttgcagttttcctcatttttccag
gtcactgtcctagccgtaagaatggcagaatgcctgctttcaaaagttggccgagattcc
aaccgcaacgccagatgtgctcctgtcacaacctctgaaaagactccatcactggctggc
atggcagcacagatggcagacactacttggcgccctgtgccttcagaaatccagcatccg
tactccaaattctcggattggaagttcaaactgttccgcattaagtccattgagagagct
ccactgtgtccagaaaaagagaaccaaccgccagacgtgactgagtccgaatctccaaag
gacgccgacatgctcaacgagaggccgggccttgctggcgtcatgaagctctgcttgggt
ggaaagtcaaaagaatccatccagaagaattcattggacctaaagctggcagaaatcgat
gcacatatgaataatctgaggatgctgtgcagactctgtggctccacgttgaagaaatat
caagccaactttgaatatgaagttcaagggctactggacaccatgagcagggagaagttg
aggaagatgggctgcagggccagcagctggccagaagtcatcttaaaggtgttcaaggtg
gacgtcaccagtgaccttgagactgtccaccccacctttttttgccacagctgctggaag
atagccataagaggagggggtttctgctgcttctctcgcatccgcataccacagtggaga
ccccactctgttctttgcaagctttgcttccccagaggctccgtcaagcggaaaggaact
cctcaaagccttcacctaatgaagaaagcaaaagtggagatgaaagaacagaagagaagg
cggaacgccaaagatgagggtcaaccaaaacattggtccaagctccaacggcagaggaat
ttatgggtcaagaccatcacacgctgtaaaaaaacacacctcagctccagtctcttgacc
gctgactaccccgtggactttgtccactccattagctgccagatctgtggccacatagtg
gcggaccccatccagaactcatgtaagcacttgttctgcaggtcttgcatcctcaagtat
acccaagtcatgggctcccattgtcccgtgtgccgagttgcctgctgctcctccaatctg
gttcccccggctaaatctttcctgaatatcctgcagtctttacatatccgctgcccttcc
gaagactgcggagagcaggtgaagcttgaagactacggaccgcacacgctcagtcaccgg
gagttcaaagccaacgaggcctactcaccgatcaacaaaggtggccggccgcggcagcac
ctgctctccttgacccgtcgggcacagaagcaccggctcagggagctcaagcatcaggtg
aagatgtttgcagagaaagaggaaggtggagacataaaatcagtgtgcctcacaatgttc
ctcttggccttgagagctggcaacgagcacagaaaggcagatgagctggaggccatcatg
caaggacgaggctccggcctacaccctgcagtctgcctagcaattcgagtcaacaccttt
ctcagctgcagtcagtaccacaaaatgtaccgcacagtgaaagcgacaagtggacggcaa
atcttccagcccctgcatgccctccgaaatgcagaaaaggcacttctgccaggatatcac
ccgtatgagtggcaaccgtctttgaaaaatgtctcaagcaacacagaagtaggcatcatc
gatggcctgtcaggatggaaagcttcagtggacgacgcccagatggacactattgctcgt
aggttccgttatgatgtcgccgtggttgctgctctcaaggacctggaggaggatatcctt
gaaggcataaaggagcatgagttggatgattcctccaccgaaatttttacagtgacagta
aaagagtcatgtgatggaatgggagatgtaagtgaaaaacacggtggtggtccagcacta
ccagaaaaagctgtgcgctactctttcacgattatgtcaattgcgacacgagatgaagag
ggcaacaacgttatgatctttcaagagtccaagcctaattctgaactgtgctgcaagcca
ctctgcctgatgtttgctgatgagtcggatcatgagacattaacagccatcttaggccct
gtggtggccgaaagagaagctatgaaggagagtcgattaattttagacattggtggactt
tctcggtgttttcgctttattttccgaggaacaggctacgatgaaaaactggtaagagaa
ttagagggattagaagcctctgggtcgacgtatatatgcacactttgtgactctaccagg
gttgaagcatccagaaacatgattctccacaccattactagaagtcacgaagagaacttg
gaacgttacgagatctggaggtccaacccattctcagagtctgctgatgacctccgggac
agagtcaaaggcgtttcagccaaacctttcatggagacccacccttccatcgatgcactc
cactgtgacattggaaatgcggctgagttttacaagattttccaggatgaaattggggaa
gtcttccaaaatcccaaccccccaaaagaggaaagaaaaagatggcaatcggctctggac
aagcaactgaggaaaaagatgaacttaaaaccaattatgagaatgaacggaaattttgct
cgcaaactcataaccagtgaagcagtggaagcagtttgtgaactcgttccctcagaggag
cgcaaagaagctcttcgagaactcgtgaacctctaccttcaaatgaaacctgtctggcgt
tcaacttgtccacttaaagaatgccctgacctgctatgtagatatagttttaactcgcag
cgctttgcagagcttctctcctccactttcagttatcgctatgatggaaagatcaccaac
tatttacacaagacgttggctcacgtacccgaaatcatcgaaaaagaaggatccatcggt
gcttgggccagtgaaggaaacgagtcaggaaataaactcttccgtcgttttcgtaaaatg
aatgctcgacagtccaagtgctatgagttggaagacattcttaaacatcactggctgtat
acttcaaagtacctccagaagtttatggaggcacataagaattcggttaaagctattgaa
gccaccatcacaccgatagagactgaagatgatcctactgatgttatagattctctcgag
ttctga
DBGET
integrated database retrieval system