KEGG   Polypterus senegalus (gray bichir): 120517486
Entry
120517486         CDS       T08668                                 
Symbol
rag1
Name
(RefSeq) V(D)J recombination-activating protein 1
  KO
K10628  V(D)J recombination-activating protein 1 [EC:2.3.2.27]
Organism
psex  Polypterus senegalus (gray bichir)
Pathway
psex04068  FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:psex00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04068 FoxO signaling pathway
    120517486 (rag1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:psex04121]
    120517486 (rag1)
Enzymes [BR:psex01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     120517486 (rag1)
Ubiquitin system [BR:psex04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    120517486 (rag1)
SSDB
Motif
Pfam: RAG1 RAG1_imp_bd zf-RAG1 zf-C3HC4 zf-C3HC4_2 zf-RING_2 zf-RING_UBOX zf-C3HC4_4 zf-RING_6 zf-RING_10
Other DBs
NCBI-GeneID: 120517486
NCBI-ProteinID: XP_039595773
LinkDB
Position
1:6686476..6728469
AA seq 1161 aa
MRTSREGPSSAEAEENPAAWKVDTTPEPTSGSVVGTADLPYGEAEGGSIKGPIGAENVGP
AEKTSRGAASGFLQFSSFFQVTVLAVRMAECLLSKVGRDSNRNARCAPVTTSEKTPSLAG
MAAQMADTTWRPVPSEIQHPYSKFSDWKFKLFRIKSIERAPLCPEKENQPPDVTESESPK
DADMLNERPGLAGVMKLCLGGKSKESIQKNSLDLKLAEIDAHMNNLRMLCRLCGSTLKKY
QANFEYEVQGLLDTMSREKLRKMGCRASSWPEVILKVFKVDVTSDLETVHPTFFCHSCWK
IAIRGGGFCCFSRIRIPQWRPHSVLCKLCFPRGSVKRKGTPQSLHLMKKAKVEMKEQKRR
RNAKDEGQPKHWSKLQRQRNLWVKTITRCKKTHLSSSLLTADYPVDFVHSISCQICGHIV
ADPIQNSCKHLFCRSCILKYTQVMGSHCPVCRVACCSSNLVPPAKSFLNILQSLHIRCPS
EDCGEQVKLEDYGPHTLSHREFKANEAYSPINKGGRPRQHLLSLTRRAQKHRLRELKHQV
KMFAEKEEGGDIKSVCLTMFLLALRAGNEHRKADELEAIMQGRGSGLHPAVCLAIRVNTF
LSCSQYHKMYRTVKATSGRQIFQPLHALRNAEKALLPGYHPYEWQPSLKNVSSNTEVGII
DGLSGWKASVDDAQMDTIARRFRYDVAVVAALKDLEEDILEGIKEHELDDSSTEIFTVTV
KESCDGMGDVSEKHGGGPALPEKAVRYSFTIMSIATRDEEGNNVMIFQESKPNSELCCKP
LCLMFADESDHETLTAILGPVVAEREAMKESRLILDIGGLSRCFRFIFRGTGYDEKLVRE
LEGLEASGSTYICTLCDSTRVEASRNMILHTITRSHEENLERYEIWRSNPFSESADDLRD
RVKGVSAKPFMETHPSIDALHCDIGNAAEFYKIFQDEIGEVFQNPNPPKEERKRWQSALD
KQLRKKMNLKPIMRMNGNFARKLITSEAVEAVCELVPSEERKEALRELVNLYLQMKPVWR
STCPLKECPDLLCRYSFNSQRFAELLSSTFSYRYDGKITNYLHKTLAHVPEIIEKEGSIG
AWASEGNESGNKLFRRFRKMNARQSKCYELEDILKHHWLYTSKYLQKFMEAHKNSVKAIE
ATITPIETEDDPTDVIDSLEF
NT seq 3486 nt   +upstreamnt  +downstreamnt
atgcgcacgtcccgcgaagggccgtcctctgcggaggcagaggaaaaccccgcagcgtgg
aaggtggacacgacgcctgagcccactagtggttccgtggtggggactgcggacttgccg
tatggagaagccgaaggagggagcatcaaggggccaatcggagcggagaacgtcggccca
gctgagaagacgagccgaggggctgcgtcaggatttttgcagttttcctcatttttccag
gtcactgtcctagccgtaagaatggcagaatgcctgctttcaaaagttggccgagattcc
aaccgcaacgccagatgtgctcctgtcacaacctctgaaaagactccatcactggctggc
atggcagcacagatggcagacactacttggcgccctgtgccttcagaaatccagcatccg
tactccaaattctcggattggaagttcaaactgttccgcattaagtccattgagagagct
ccactgtgtccagaaaaagagaaccaaccgccagacgtgactgagtccgaatctccaaag
gacgccgacatgctcaacgagaggccgggccttgctggcgtcatgaagctctgcttgggt
ggaaagtcaaaagaatccatccagaagaattcattggacctaaagctggcagaaatcgat
gcacatatgaataatctgaggatgctgtgcagactctgtggctccacgttgaagaaatat
caagccaactttgaatatgaagttcaagggctactggacaccatgagcagggagaagttg
aggaagatgggctgcagggccagcagctggccagaagtcatcttaaaggtgttcaaggtg
gacgtcaccagtgaccttgagactgtccaccccacctttttttgccacagctgctggaag
atagccataagaggagggggtttctgctgcttctctcgcatccgcataccacagtggaga
ccccactctgttctttgcaagctttgcttccccagaggctccgtcaagcggaaaggaact
cctcaaagccttcacctaatgaagaaagcaaaagtggagatgaaagaacagaagagaagg
cggaacgccaaagatgagggtcaaccaaaacattggtccaagctccaacggcagaggaat
ttatgggtcaagaccatcacacgctgtaaaaaaacacacctcagctccagtctcttgacc
gctgactaccccgtggactttgtccactccattagctgccagatctgtggccacatagtg
gcggaccccatccagaactcatgtaagcacttgttctgcaggtcttgcatcctcaagtat
acccaagtcatgggctcccattgtcccgtgtgccgagttgcctgctgctcctccaatctg
gttcccccggctaaatctttcctgaatatcctgcagtctttacatatccgctgcccttcc
gaagactgcggagagcaggtgaagcttgaagactacggaccgcacacgctcagtcaccgg
gagttcaaagccaacgaggcctactcaccgatcaacaaaggtggccggccgcggcagcac
ctgctctccttgacccgtcgggcacagaagcaccggctcagggagctcaagcatcaggtg
aagatgtttgcagagaaagaggaaggtggagacataaaatcagtgtgcctcacaatgttc
ctcttggccttgagagctggcaacgagcacagaaaggcagatgagctggaggccatcatg
caaggacgaggctccggcctacaccctgcagtctgcctagcaattcgagtcaacaccttt
ctcagctgcagtcagtaccacaaaatgtaccgcacagtgaaagcgacaagtggacggcaa
atcttccagcccctgcatgccctccgaaatgcagaaaaggcacttctgccaggatatcac
ccgtatgagtggcaaccgtctttgaaaaatgtctcaagcaacacagaagtaggcatcatc
gatggcctgtcaggatggaaagcttcagtggacgacgcccagatggacactattgctcgt
aggttccgttatgatgtcgccgtggttgctgctctcaaggacctggaggaggatatcctt
gaaggcataaaggagcatgagttggatgattcctccaccgaaatttttacagtgacagta
aaagagtcatgtgatggaatgggagatgtaagtgaaaaacacggtggtggtccagcacta
ccagaaaaagctgtgcgctactctttcacgattatgtcaattgcgacacgagatgaagag
ggcaacaacgttatgatctttcaagagtccaagcctaattctgaactgtgctgcaagcca
ctctgcctgatgtttgctgatgagtcggatcatgagacattaacagccatcttaggccct
gtggtggccgaaagagaagctatgaaggagagtcgattaattttagacattggtggactt
tctcggtgttttcgctttattttccgaggaacaggctacgatgaaaaactggtaagagaa
ttagagggattagaagcctctgggtcgacgtatatatgcacactttgtgactctaccagg
gttgaagcatccagaaacatgattctccacaccattactagaagtcacgaagagaacttg
gaacgttacgagatctggaggtccaacccattctcagagtctgctgatgacctccgggac
agagtcaaaggcgtttcagccaaacctttcatggagacccacccttccatcgatgcactc
cactgtgacattggaaatgcggctgagttttacaagattttccaggatgaaattggggaa
gtcttccaaaatcccaaccccccaaaagaggaaagaaaaagatggcaatcggctctggac
aagcaactgaggaaaaagatgaacttaaaaccaattatgagaatgaacggaaattttgct
cgcaaactcataaccagtgaagcagtggaagcagtttgtgaactcgttccctcagaggag
cgcaaagaagctcttcgagaactcgtgaacctctaccttcaaatgaaacctgtctggcgt
tcaacttgtccacttaaagaatgccctgacctgctatgtagatatagttttaactcgcag
cgctttgcagagcttctctcctccactttcagttatcgctatgatggaaagatcaccaac
tatttacacaagacgttggctcacgtacccgaaatcatcgaaaaagaaggatccatcggt
gcttgggccagtgaaggaaacgagtcaggaaataaactcttccgtcgttttcgtaaaatg
aatgctcgacagtccaagtgctatgagttggaagacattcttaaacatcactggctgtat
acttcaaagtacctccagaagtttatggaggcacataagaattcggttaaagctattgaa
gccaccatcacaccgatagagactgaagatgatcctactgatgttatagattctctcgag
ttctga

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