Polypterus senegalus (gray bichir): 120518989
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Entry
120518989 CDS
T08668
Name
(RefSeq) neuronal PAS domain-containing protein 3 isoform X1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psex03000
]
120518989
Transcription factors [BR:
psex03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
120518989
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_9
PAS_4
HLH
bHLH_NPAS4
Motif
Other DBs
NCBI-GeneID:
120518989
NCBI-ProteinID:
XP_039597976
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All DBs
Position
18:7134879..7851022
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AA seq
956 aa
AA seq
DB search
MIRIFPDFSVQVTAAAGGATGGVTAGPGVGRVPGTTNGTGANVQGITSYQQSDPYWERPA
NASSCSATRPKTLHLGGQQHTSSPWLQALRKEKSRDAARSRRGKENFEFYELAKLLPLPG
AITSQLDKASIIRLTISYLKMRDFANQGDPPWNIRIEGPPPNTSVKAIGAQRRRSPSAVA
TDVFEQHLGSHILQSLDGFVFALNKEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD
HVEMAEQLGMKLPPGRGLLSQSTTEDGASSASSSSQSETPEPVESSSPSLLAPDNTLERS
FFIRMKSTLTKRGVHIKSSGYKVIHITGRLRIRMSLTHGRNVPNQIMGMVVVAHALPPPT
INEVRIDCQMFVTRVNMDLNIVYCENRISDYMDLTPVDIVGKRCYQFIHAEDVEGIRHSH
LDLMNKGQCVTKYYRWIQKNGGYIWIQSSATIAINAKNANEKNIIWVNYVLSNPEYKDTP
MDIAQLPNLPEKASESSETSDSESESKENSEDNENSKSDGKGHQSENSEDPESDSKKQPD
NQSDNEMNCNDDGNSSSNQESRDSEDSFEHSDFESNKMTEEDGFGTLGAMQIKVERYVEG
DSALRLHSRESVTSDSAKDSDSMGEAGTPSSSKHQKRKKRRKKQKGSRTTRRRLSSTSSP
NGLDPALVDQPQLLSSPNSASVLKIKTEISEPINFDNDSSIWNYPPNREISRNESPYSMT
KPPGSDHFPSPQTSSSSLHVAIPDSVLTPPGAEASGSRKTPFNGSSTASSSSTSSSLAPV
SSDPLSPPLSASPRDKQQGTPSTSSSLLYAGDLEALQRLQAGNVVLPLVHRVTGTLAATS
TAAQRVYTTGTIRYAPAEVTLAMQGNLLPNAHAVNFVDVNSSSFGLDPKTPMEMLYHHVH
RLNMSGPFGGAVSASSLTQMPAGNVFTTAEGLFSTLPFPVYSNGIHTTQTLERKED
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgatcaggatcttcccggatttcagcgttcaggtgacggctgcggccggcggggcaacc
ggcggagtgacagcgggtcccggcgtgggaagagtccccggcaccaccaacggcaccggc
gcgaacgtccagggcatcacttcgtatcagcaaagcgacccctactgggagaggccagct
aatgccagctcctgttcagctactaggcccaagacactccaccttggagggcagcaacat
acctcatcgccatggctacaagcgttgaggaaggaaaagtcccgagatgcggctcgttct
cggagaggcaaagaaaattttgaattctacgagctggccaaactcctgccgctcccgggt
gccatcaccagccagcttgacaaagcctccattatccgcctcaccatcagctatctaaaa
atgcgagactttgcaaatcaaggtgatcctccctggaacatcaggatagaagggccacct
ccaaacacttcggtgaaagctataggggcacagcgcagaagaagtcccagtgcggtggcc
acagacgtctttgagcaacatctgggcagccatattctgcagtctctggatggatttgta
tttgcactaaacaaggaaggaaaatttttgtacatctcagaaactgtgtccatatacctg
gggctgtcacaggtggagctgaccggcagcagtgtgttcgactacgtccaccccggagac
cacgtggagatggcggaacagctgggcatgaagcttcctccgggacgaggcctcctctcc
cagagcacgacggaggacggtgccagctcggcgtcttcatcgtcacagtcggagaccccg
gagccagtggaatccagcagccccagtttactagcgcctgacaatacacttgagcgctca
ttctttattcggatgaaatcaacattgaccaagaggggagtccatatcaaatcatctggt
tacaaggttatccatattacaggacgattacggatcaggatgtccctgacccatggacgc
aacgtccctaatcaaataatgggcatggtagttgtggcccacgcgctgcctcctcccaca
atcaatgaagtgagaatcgactgccagatgtttgtcactcgagtaaatatggacctcaat
attgtttactgtgaaaatagaattagtgattacatggatctgactcctgtagacattgtg
ggcaagagatgctatcaattcattcatgctgaagacgtggaggggatcagacacagccat
ttagacctaatgaacaaaggtcaatgtgtcacaaagtactatcggtggatccagaaaaat
ggaggatatatttggatccagtcaagtgcaacgattgctataaatgccaagaatgccaat
gaaaagaacatcatttgggtcaactatgtgctcagcaacccggaatacaaagacactccc
atggatattgcacagcttcccaatctcccagagaaagcgtcagagtcttccgaaacatca
gactctgaatcagaatccaaggaaaactcagaggacaatgaaaactccaagtctgatgga
aaggggcatcaatcagaaaacagtgaagaccccgagtctgacagcaaaaagcagcctgac
aaccagtcagacaacgaaatgaactgcaatgacgatgggaacagctccagcaaccaggag
agccgggacagcgaagacagctttgagcattcagattttgaaagcaacaagatgacagag
gaagatggttttggcactctgggagccatgcaaatcaaggtagaacgctatgtggaagga
gactcggcgctgcggctacacagccgcgaatcggtgacctcagacagtgccaaggactct
gacagcatgggagaagccggcacaccgtcttccagtaagcaccagaagaggaagaagagg
aggaaaaaacagaagggcagtagaacgacaaggcgtaggctctccagtacatcaagcccc
aatgggctggaccccgctttagtagaccagccccagctgctctcctcaccaaacagtgcc
tcagtgctcaaaatcaaaactgaaatctcagagcccatcaactttgacaatgatagcagt
atttggaactatcctcccaatcgggagatctcaaggaacgaatccccctatagcatgacc
aagcctcctggctctgatcatttcccatctccacaaaccagcagcagcagtttacatgtc
gccattcccgactctgtccttaccccaccgggggcagaggcctctggaagccgcaagact
ccgttcaacggcagcagcactgcgtcctcctctagcacctcctccagtcttgcacccgtc
tcctcagaccctctgtccccgccactttcagcttctcctcgcgacaaacagcagggaact
ccaagtacttccagctctttgctgtatgctggggacctggaggcccttcaaaggttacaa
gctggcaatgtggtacttccattagttcacagggtaacagggacccttgccgccaccagc
actgccgcccaaagggtctataccactggcaccatccgttacgccccagctgaagtaacc
ttagcaatgcagggcaatctcttgccaaatgcccatgcggttaactttgtggatgtcaac
agctccagctttggacttgatcccaagactcccatggagatgctctaccaccacgttcat
cggcttaacatgtctgggccatttggtggcgccgtcagcgcatccagcctgacacaaatg
ccggcagggaatgtctttaccacagcagagggactcttttcaactcttccattccctgtg
tacagcaatggaatccacaccacacagaccctggagcggaaagaagactaa
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