Polypterus senegalus (gray bichir): 120520640
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Entry
120520640 CDS
T08668
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03020
RNA polymerase
psex03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120520640 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
120520640 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psex03021
]
120520640 (polr2b)
03400 DNA repair and recombination proteins [BR:
psex03400
]
120520640 (polr2b)
Enzymes [BR:
psex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120520640 (polr2b)
Transcription machinery [BR:
psex03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120520640 (polr2b)
DNA repair and recombination proteins [BR:
psex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120520640 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
120520640
NCBI-ProteinID:
XP_039598790
LinkDB
All DBs
Position
Unknown
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVATLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSNNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFLGPTYYQRLKHMVDDKIHSRARGPLQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRLPYACKLLFQELMSMSIAPRMMTT
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaccaggatgaagatattcagtacgatgaagacgatgacgagatcaccccagat
ttgtggcaggaagcctgctggatcgtcatcagctcctactttgatgagaaggggctcgtg
cgacagcagcttgactcgtttgatgagttcattcagatgtctgtgcagcgaatagtggaa
gacgcccccccaattgatctgcaggctgaggcccagcatacgtctggagaagtggaggag
ccgccacgctacctgctcaagtttgaacagatttacctgtcaaagcctacgcactgggag
agagatggtgcaccttcacccatgatgcctaatgaagcaagactgcgaaatctcacgtac
tctgctcctctctatgtcgacataaccaaaacggttataaaagaaggtgaggagcagctg
cagacacagcaccagaagaccttcattggcaagattcccatcatgcttcgctcgacttac
tgcctgctcagcggcctgacagaccgtgatctctgtgagcttaacgaatgccctctggat
cctggcggctattttatcatcaatggatctgaaaaggttctgatcgcacaggagaagatg
gccaccaatacggtgtatgtgtttgctaagaaggactccaaatacgcttacacaggggaa
tgtcgctcctgcctggagaattcttctcgacctacaagtacaatatgggtcagcatgatg
gcaagaggtggccagggtgtcaagaaaagcgccattggtcagcgcattgtggccacattg
ccctacattagacaggaagtgcccattataattgtttttcgagctctgggattcgtgtct
gacagagatattctggaacacataatttacgactttgatgaccccgagatgatggaaatg
gtcaagccctccctggacgaggcttttgtcattcaagaacaaaatgtggctttaaatttt
attggctccagaggtgccaagcctggtgttaccaaggagaagagaatcaagtatgccaag
gaagtccttcagaaggaagtgctgcctcatgtgggtgtcagtgacttttgtgagactaag
aaggcctatttcctggggtacatggttcatcgacttctcctcgctgcgttaggccgccgg
gagctagacgacagagatcactatggcaacaaaagactggaccttgcagggcccttgttg
gcattcttgtttcgagggatgttcaagaatcttctgaaagaaattcgtatctacgcccag
aaattcattgaccgaggtaaagacttcaacttagagctggctataaagactcgcatcatc
tccgatggcttgaagtattctctggctactggaaactggggagacgtaaagaaggctcat
caggcgagagctggggtgtcgcaggtgttgaaccgtttgacgtttgcatccaccttgtct
catctcagacgtgtcaactctccaatagggagggatgggaaacttgccaaacccagacag
ctacacaatactttgtggggaatggtgtgccctgccgagactccagagggtcacgctgtg
gggcttgtcaagaacctcgccctaatggcctacatctctgtgggctcacagccctcgcca
atcttggagtttttggaagagtggagcatggagaacctggaagagatctctcctgctgca
attgccgatgccaccaagatctttgtaaacggctgctgggttggaatccacaaagatcct
gaacagctgatgaacacactgcggaaactgcgccgtcagatggatatcatcgtgtctgag
gtgtccatgatccgggatatccgggaacgcgagattcgcatttacacggacgcgggcaga
atctgcaggccgctgctgatcgtagagaagcagaagcttctgctgaagagaagacacatt
gaccagctgaaggagcgcgagtacaacaactacagttggcaggacctggtggccagcgga
gtggtggagtacatcgacactctggaagaggagaccgtcatgttggccatgaccccggac
gaccttcaggagaaaggcgttgcctactgctccacgtacacccactgcgaaatccaccct
tctatgatcctgggggtgtgtgcctccatcatcccgtttcctgaccacaaccagtccccc
aggaacacgtaccagtctgctatggggaagcaggccatgggagtctacattaccaatttc
cacgtgcgcatggacaccctggcccacgtgctctactacccccagaagcctttggtgacc
acccgctccatggagtacctgcgcttccgagagctgcctgcaggaattaactccattgtg
gccattgcctcttacacggggtacaaccaggaggactcggtgattatgaaccgctccgcg
gtggacaggggcttcttcaggtcggtcttctaccgctcttacaaagaacaagagtccaag
aaaggatttgaccaggaggagatctttgagaaaccgacccgtgaaacgtgccagggtatg
aggcatgccatctatgacaaactggacgacgatgggctcatcgcacctggcgttcgtgtg
tccggggaggacgtgatcattggcaagacggtcacactgcccgagaatgacgacgagctg
gacagcaacaaccgacgctacaccaaacgtgactgcagcaccttcctgcgcaccagcgag
acgggcattgtcgatcaggtcatggtgacgctgaaccaagagggctacaagttctgcaag
attcgggtgcgatctgtgagaatccctcaaatcggggacaagtttgccagtaggcatggg
cagaagggcacctgtggaattcagtaccggcaggaggacatgccgtttacgtgcgaaggc
atcacgccagacatcatcatcaaccctcacgccatcccctctcgaatgacagtcggtcac
ttgattgagtgtctgcagggcaaggtgtcggcgaacaagggggagattggcgatgccacg
cctttcaacgatgcggtcaacgtgcagaaggtgtccaatctgctgtcggagtacggctac
cacctgcgaggaaacgaggtgctctacaatggcttcacgggacggaagctgacgtcgcag
atctttctgggtcccacctactaccagcgcttgaagcacatggtggacgacaagatccac
tccagggctcggggaccccttcagatcctcaaccggcagcccatggagggcagatcacgg
gatggtggtctgcgtttcggcgagatggagcgagattgtcagatcgctcacggtgccgcc
cagttcttgagggagaggctctttgaggcctctgacccctaccaggtgcacgtgtgtaac
ctgtgtggcctcatggcgatcgccaacacgaggacacacacgtacgagtgccggggctgc
cgcaacaagacccagatctcattggtccgtttgccgtacgcctgcaagctgctcttccag
gagttgatgtccatgagtatcgcgccccgcatgatgaccacctga
DBGET
integrated database retrieval system
