KEGG   Polypterus senegalus (gray bichir): 120522982
Entry
120522982         CDS       T08668                                 
Symbol
lig1
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
psex  Polypterus senegalus (gray bichir)
Pathway
psex03030  DNA replication
psex03410  Base excision repair
psex03420  Nucleotide excision repair
psex03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:psex00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    120522982 (lig1)
   03410 Base excision repair
    120522982 (lig1)
   03420 Nucleotide excision repair
    120522982 (lig1)
   03430 Mismatch repair
    120522982 (lig1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psex03032]
    120522982 (lig1)
   03400 DNA repair and recombination proteins [BR:psex03400]
    120522982 (lig1)
Enzymes [BR:psex01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     120522982 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     120522982 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     120522982 (lig1)
DNA replication proteins [BR:psex03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    120522982 (lig1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     120522982 (lig1)
DNA repair and recombination proteins [BR:psex03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     120522982 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     120522982 (lig1)
   MMR (mismatch excision repair)
    Other MMR factors
     120522982 (lig1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 120522982
NCBI-ProteinID: XP_039599791
LinkDB
Position
1:complement(3955168..4044380)
AA seq 1088 aa
MQRSIASFFQPMKGKEKKEEKPTKEEKPAEKKQIIKSPLKPQNGITDSESPVKRSVKKCR
AIIDSDDDEPTVEEPSRAKKEPRETSPDAEENQDPPLSSPPQVKTTVNSSVSPGERASDS
DAVISPSGIPKRRTARKQFPKRKLHSTEESSVPDGNDAKKARYDEKREEHENEEEENMEV
DELPAEQEKGGKDDVTENKDHSEQSTEECTREGKREVEQTRECEDSRESDPEVRNAESEK
EQSDAEETPTKTAEIKDDTMPNVESDAADKEESRKNMKTGSSPKQVEKTKGSPESKAQKG
KGDGSGKRKSKGDKEDGSPKQEKRDKKSPKQEAKKVKVESSPSQVEKKHKQEDAGKSAKQ
SDTAEESEKTQVTKAKPISSFFAPRKAAVKLEKPAAEKSVNPLSSPEESGTKETKQSSFF
GSSVKTDAAKETSSDYNPSKSHYHPVDDAIWSHGQRVPYLAVARTFEKIEEESARLRIIE
ILSNLFRSIIVLTPQDLLPSLYLCLNRLGPSFLGLELGVGETVLMKAVAQATGRQLDKIK
AEAQEKGDLGLVAESSRSNQRMMFTPPNLTVVGVFNKLTDIAKMTGNASMNKKIDIIKGL
FVACRFSEARYIVRSLGGKLRIGLAEQSVLAALAQAVCLTPPGQEFPPKIVDAGKGQSSE
SRKAWIEEKALILKQTYCELPNYDAIIPVILEEGIDELPKRCKLTPGVPLKPMLAHPTRG
IGEVMKRFDEAAFTCEYKYDGERAQIHILENGEIHIYSRNQENNTSKYPDIISRIPKVKK
ADVVSCIIDAEAVAWDQEKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESL
VRQPLSKRRQLLKESFIEKEGEFVFACSIDSDNTDVIAEFLEQSIKDSCEGLMVKTLEKD
ATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAFLGKGKRTGTYGGFLLACYDEENEEY
QSICKIGTGFKDEDLEQHFNFFKEHTLPKSRPYYRVDQSTEPDVWLDAVQVWEVKCADLS
LSPVHKAAMGLVDPDKGISLRFPRFLRIRDDKKPEEGTSGSQVADLYRKQQQIQNQGASE
NAELEDYY
NT seq 3267 nt   +upstreamnt  +downstreamnt
atgcagcggagtatagcgtcatttttccagccgatgaaaggaaaggagaagaaagaagaa
aagccaacaaaagaagagaagccagcagaaaagaaacagataatcaaatccccacttaaa
cctcaaaatggaataactgactccgagtccccagtgaaaaggagtgtgaagaagtgtcga
gcaatcatagacagcgatgatgatgagccgaccgttgaggagccatctcgggcaaagaaa
gaaccacgggagacatcacctgatgcagaagagaaccaggatccaccactttcatcacct
ccacaagtaaagacaactgtgaactcctccgtttctccgggagagagagcctcggattct
gacgctgtaatctcgccatctggcattcccaagcgcaggacagcacggaagcagttcccc
aaaaggaagctccactccactgaagagagtagtgtgcctgatgggaatgatgccaagaaa
gcccgctatgatgaaaagagggaagagcatgaaaatgaggaagaagaaaatatggaagtg
gatgagttgcccgcagagcaagagaaaggcggcaaggacgacgttactgaaaataaagat
cactcagaacaatcaacggaggaatgtaccagagaaggaaagagggaagtcgaacaaaca
cgtgaatgtgaagacagcagagaaagtgatccagaagtgagaaacgcagagagcgaaaag
gaacaaagtgatgcagaagaaactccaacaaaaacagccgagatcaaagatgacacaatg
cctaatgtggaatcagacgctgcagataaagaggaatcgcgcaaaaatatgaagactgga
agctctcctaaacaggtggagaaaactaaagggtcacctgaaagcaaagcacaaaagggc
aaaggtgacgggtcaggaaaacgtaaatcaaaaggagacaaagaagacggatctcccaaa
caagaaaagagagacaaaaaatccccaaaacaggaagccaaaaaagtgaaagttgaatcc
tccccatctcaggtggaaaaaaagcataaacaggaggatgctgggaaaagcgccaagcaa
tcagatacagcagaggagtctgaaaagacacaagtgacaaaggccaagcccattagcagc
ttctttgctccccggaaagctgccgtcaaattagagaagcctgcggcagagaaatctgta
aatcctctctcttctcccgaagagtctggtacaaaagaaacaaagcaatcgagctttttt
ggatcttctgtgaagacggacgctgccaaggaaacatcttcagactacaacccatcaaag
tcgcactatcatccagttgatgatgccatctggagccatggacaaagggttccatatttg
gctgtagctcgaacgtttgaaaaaattgaagaggagtctgcaagactgaggatcattgag
attctcagcaatctcttccgctcaatcattgtgctcactcctcaagacctccttccatct
ctgtatctttgcctaaaccgacttggcccgtcatttctgggattagagttgggtgtcgga
gaaactgtgctgatgaaagcggtcgctcaagccacaggtcgccagctagacaagatcaaa
gcagaagcccaggagaagggagatctgggcctggtggcagagagctctcgcagcaaccag
cgcatgatgttcacgcctcccaacctcactgttgttggagtttttaataagctgacggat
attgccaaaatgaccggaaatgcttccatgaataagaagattgatatcatcaaaggactg
tttgtggcttgccgattctctgaggcccgttatattgtaaggtcacttggtggaaagctt
cgaattggattggcagaacagtctgtgctggcagctttggcacaagccgtgtgtctgact
ccaccagggcaagaattcccacccaaaattgtcgatgcaggcaagggacagtcttctgag
tcacgcaaggcctggattgaagagaaggccctcattctgaagcagacctactgtgagctc
cctaattatgatgccatcattcctgtcatattggaagagggcattgatgagcttcccaaa
cgctgcaagctaaccccaggggtgcccttaaagccaatgttggcccaccctacacgtgga
atcggtgaggtgatgaagaggtttgatgaggctgcttttacttgtgaatataaatatgat
ggagaaagagctcagattcatattttggagaatggagagattcatatttatagtcgcaac
caagaaaacaacaccagcaaatatcctgacatcatctctaggatacccaaggtgaaaaag
gcagatgtggtgtcttgcattattgacgctgaggcagtggcttgggatcaggaaaagaaa
caaatccagccattccaagtactaaccactcgtaagagaaaggatgttgacgcatctgag
atcaaagttcaagtgtgtgtttatgctttcgatcttctgtatctcaatggagagtctttg
gttcgccagcctctgtccaaaagacgtcaactgcttaaagaaagcttcattgagaaggag
ggagagtttgtgtttgcctgctccattgactctgacaacactgatgtcatcgctgaattc
ctggagcagtctatcaaagattcctgtgaagggctaatggtgaaaaccctggaaaaagat
gccacctatgaaattgccaaaagatcacacaactggctgaagctgaaaaaagactattta
gaaggagtcggagacactttggatttggtcgtgattggagcatttttgggaaagggcaaa
aggactgggacctacgggggcttccttttggcttgttatgatgaagagaatgaagagtat
cagtccatttgtaagattgggacaggatttaaggatgaagatctggagcagcatttcaac
ttcttcaaggagcatacattgcctaaatcccggccatactatcgcgtggatcagtcaact
gaaccagatgtgtggctggatgccgttcaagtgtgggaagtcaagtgtgccgacctctcc
ttgtcgccagttcacaaagcagccatgggcctggttgacccagataaaggcatttctctc
cgttttccccgatttctgaggattcgagatgacaagaaaccagaagagggtacttctgga
tcacaggtggcagatttgtatagaaaacagcagcagattcagaaccagggtgcttctgaa
aatgcagaactggaggactattactga

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