Polypterus senegalus (gray bichir): 120522982
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Entry
120522982 CDS
T08668
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03030
DNA replication
psex03410
Base excision repair
psex03420
Nucleotide excision repair
psex03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120522982 (lig1)
03410 Base excision repair
120522982 (lig1)
03420 Nucleotide excision repair
120522982 (lig1)
03430 Mismatch repair
120522982 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psex03032
]
120522982 (lig1)
03400 DNA repair and recombination proteins [BR:
psex03400
]
120522982 (lig1)
Enzymes [BR:
psex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120522982 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
120522982 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
120522982 (lig1)
DNA replication proteins [BR:
psex03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
120522982 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
120522982 (lig1)
DNA repair and recombination proteins [BR:
psex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
120522982 (lig1)
NER (nucleotide excision repair)
Other NER factors
120522982 (lig1)
MMR (mismatch excision repair)
Other MMR factors
120522982 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
120522982
NCBI-ProteinID:
XP_039599791
LinkDB
All DBs
Position
1:complement(3955168..4044380)
Genome browser
AA seq
1088 aa
AA seq
DB search
MQRSIASFFQPMKGKEKKEEKPTKEEKPAEKKQIIKSPLKPQNGITDSESPVKRSVKKCR
AIIDSDDDEPTVEEPSRAKKEPRETSPDAEENQDPPLSSPPQVKTTVNSSVSPGERASDS
DAVISPSGIPKRRTARKQFPKRKLHSTEESSVPDGNDAKKARYDEKREEHENEEEENMEV
DELPAEQEKGGKDDVTENKDHSEQSTEECTREGKREVEQTRECEDSRESDPEVRNAESEK
EQSDAEETPTKTAEIKDDTMPNVESDAADKEESRKNMKTGSSPKQVEKTKGSPESKAQKG
KGDGSGKRKSKGDKEDGSPKQEKRDKKSPKQEAKKVKVESSPSQVEKKHKQEDAGKSAKQ
SDTAEESEKTQVTKAKPISSFFAPRKAAVKLEKPAAEKSVNPLSSPEESGTKETKQSSFF
GSSVKTDAAKETSSDYNPSKSHYHPVDDAIWSHGQRVPYLAVARTFEKIEEESARLRIIE
ILSNLFRSIIVLTPQDLLPSLYLCLNRLGPSFLGLELGVGETVLMKAVAQATGRQLDKIK
AEAQEKGDLGLVAESSRSNQRMMFTPPNLTVVGVFNKLTDIAKMTGNASMNKKIDIIKGL
FVACRFSEARYIVRSLGGKLRIGLAEQSVLAALAQAVCLTPPGQEFPPKIVDAGKGQSSE
SRKAWIEEKALILKQTYCELPNYDAIIPVILEEGIDELPKRCKLTPGVPLKPMLAHPTRG
IGEVMKRFDEAAFTCEYKYDGERAQIHILENGEIHIYSRNQENNTSKYPDIISRIPKVKK
ADVVSCIIDAEAVAWDQEKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESL
VRQPLSKRRQLLKESFIEKEGEFVFACSIDSDNTDVIAEFLEQSIKDSCEGLMVKTLEKD
ATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAFLGKGKRTGTYGGFLLACYDEENEEY
QSICKIGTGFKDEDLEQHFNFFKEHTLPKSRPYYRVDQSTEPDVWLDAVQVWEVKCADLS
LSPVHKAAMGLVDPDKGISLRFPRFLRIRDDKKPEEGTSGSQVADLYRKQQQIQNQGASE
NAELEDYY
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagtatagcgtcatttttccagccgatgaaaggaaaggagaagaaagaagaa
aagccaacaaaagaagagaagccagcagaaaagaaacagataatcaaatccccacttaaa
cctcaaaatggaataactgactccgagtccccagtgaaaaggagtgtgaagaagtgtcga
gcaatcatagacagcgatgatgatgagccgaccgttgaggagccatctcgggcaaagaaa
gaaccacgggagacatcacctgatgcagaagagaaccaggatccaccactttcatcacct
ccacaagtaaagacaactgtgaactcctccgtttctccgggagagagagcctcggattct
gacgctgtaatctcgccatctggcattcccaagcgcaggacagcacggaagcagttcccc
aaaaggaagctccactccactgaagagagtagtgtgcctgatgggaatgatgccaagaaa
gcccgctatgatgaaaagagggaagagcatgaaaatgaggaagaagaaaatatggaagtg
gatgagttgcccgcagagcaagagaaaggcggcaaggacgacgttactgaaaataaagat
cactcagaacaatcaacggaggaatgtaccagagaaggaaagagggaagtcgaacaaaca
cgtgaatgtgaagacagcagagaaagtgatccagaagtgagaaacgcagagagcgaaaag
gaacaaagtgatgcagaagaaactccaacaaaaacagccgagatcaaagatgacacaatg
cctaatgtggaatcagacgctgcagataaagaggaatcgcgcaaaaatatgaagactgga
agctctcctaaacaggtggagaaaactaaagggtcacctgaaagcaaagcacaaaagggc
aaaggtgacgggtcaggaaaacgtaaatcaaaaggagacaaagaagacggatctcccaaa
caagaaaagagagacaaaaaatccccaaaacaggaagccaaaaaagtgaaagttgaatcc
tccccatctcaggtggaaaaaaagcataaacaggaggatgctgggaaaagcgccaagcaa
tcagatacagcagaggagtctgaaaagacacaagtgacaaaggccaagcccattagcagc
ttctttgctccccggaaagctgccgtcaaattagagaagcctgcggcagagaaatctgta
aatcctctctcttctcccgaagagtctggtacaaaagaaacaaagcaatcgagctttttt
ggatcttctgtgaagacggacgctgccaaggaaacatcttcagactacaacccatcaaag
tcgcactatcatccagttgatgatgccatctggagccatggacaaagggttccatatttg
gctgtagctcgaacgtttgaaaaaattgaagaggagtctgcaagactgaggatcattgag
attctcagcaatctcttccgctcaatcattgtgctcactcctcaagacctccttccatct
ctgtatctttgcctaaaccgacttggcccgtcatttctgggattagagttgggtgtcgga
gaaactgtgctgatgaaagcggtcgctcaagccacaggtcgccagctagacaagatcaaa
gcagaagcccaggagaagggagatctgggcctggtggcagagagctctcgcagcaaccag
cgcatgatgttcacgcctcccaacctcactgttgttggagtttttaataagctgacggat
attgccaaaatgaccggaaatgcttccatgaataagaagattgatatcatcaaaggactg
tttgtggcttgccgattctctgaggcccgttatattgtaaggtcacttggtggaaagctt
cgaattggattggcagaacagtctgtgctggcagctttggcacaagccgtgtgtctgact
ccaccagggcaagaattcccacccaaaattgtcgatgcaggcaagggacagtcttctgag
tcacgcaaggcctggattgaagagaaggccctcattctgaagcagacctactgtgagctc
cctaattatgatgccatcattcctgtcatattggaagagggcattgatgagcttcccaaa
cgctgcaagctaaccccaggggtgcccttaaagccaatgttggcccaccctacacgtgga
atcggtgaggtgatgaagaggtttgatgaggctgcttttacttgtgaatataaatatgat
ggagaaagagctcagattcatattttggagaatggagagattcatatttatagtcgcaac
caagaaaacaacaccagcaaatatcctgacatcatctctaggatacccaaggtgaaaaag
gcagatgtggtgtcttgcattattgacgctgaggcagtggcttgggatcaggaaaagaaa
caaatccagccattccaagtactaaccactcgtaagagaaaggatgttgacgcatctgag
atcaaagttcaagtgtgtgtttatgctttcgatcttctgtatctcaatggagagtctttg
gttcgccagcctctgtccaaaagacgtcaactgcttaaagaaagcttcattgagaaggag
ggagagtttgtgtttgcctgctccattgactctgacaacactgatgtcatcgctgaattc
ctggagcagtctatcaaagattcctgtgaagggctaatggtgaaaaccctggaaaaagat
gccacctatgaaattgccaaaagatcacacaactggctgaagctgaaaaaagactattta
gaaggagtcggagacactttggatttggtcgtgattggagcatttttgggaaagggcaaa
aggactgggacctacgggggcttccttttggcttgttatgatgaagagaatgaagagtat
cagtccatttgtaagattgggacaggatttaaggatgaagatctggagcagcatttcaac
ttcttcaaggagcatacattgcctaaatcccggccatactatcgcgtggatcagtcaact
gaaccagatgtgtggctggatgccgttcaagtgtgggaagtcaagtgtgccgacctctcc
ttgtcgccagttcacaaagcagccatgggcctggttgacccagataaaggcatttctctc
cgttttccccgatttctgaggattcgagatgacaagaaaccagaagagggtacttctgga
tcacaggtggcagatttgtatagaaaacagcagcagattcagaaccagggtgcttctgaa
aatgcagaactggaggactattactga
DBGET
integrated database retrieval system