Polypterus senegalus (gray bichir): 120523115
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Entry
120523115 CDS
T08668
Symbol
lrrc4ca
Name
(RefSeq) leucine rich repeat containing 4C, genome duplicate a
KO
K07523
netrin-G1 ligand
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
120523115 (lrrc4ca)
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
LRR_14
V-set
Ig_2
LRR_9
LRRNT
Ig_6
DUF7617
Sp38
DUF4293
DUF6821
Syndecan
Motif
Other DBs
NCBI-GeneID:
120523115
NCBI-ProteinID:
XP_039600038
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Position
1:complement(11417564..13488887)
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AA seq
639 aa
AA seq
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MLNKMISHPQQTMRGPRWNRALSNPLLVLLLALQLLVVAGLVRAQTCPSVCSCSNQFSKV
ICTRRGLREVPDGISTNTRYLNLQENQIQVIKVDSFKHLRHLEILQLSRNHIRSIEIGAF
NGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDLG
ELKRLSYISEGAFEGLSNLRYLNLGMCNLKEIPNLTPLIKLDELELSGNQLSIIRPGSFQ
RLTHLQKLWMMHAQIQSIERNSFDDLQSLIELNLAHNNLTLLPHDLFTPLHHLERVHLHH
NPWNCNCDILWLSWWLKEMVPANTSCCARCHSPSLLKGRYIGELDQNYFTCYAPVIVEPP
ADLNLTEGMPAELKCRASTSLTSVSWITPNGTIMTHGAYKVRISVLNDGTLNFTNVTVQD
TGTYTCMVSNSAGNTTASATLNVSATENSTFSFFTTVTVETIEPPYDEGRTTEQSVGPTA
SNGWVTAFATTPLTSRSTKSTEKTFTIPVTEVDNGSLNGLDEVMKTTKIIIGCFVAITLM
AAVMLIIFYKMRKQHHRQNHHAPTRTIEIINVDDEITGGPALESHLTLPTLEHEHLNHYN
SYKTPFNHTTNTINSLHSSAHEPLLIRANSKDNVQETQI
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaagatgatatcgcacccgcagcagacgatgagaggtcctaggtggaacagg
gccctttccaaccctttacttgtcctgctgttagcccttcaactgctcgttgtggcgggc
ctggttcgagctcagacctgtccttcagtgtgttcgtgtagcaatcagttcagcaaggtg
atttgtacccgccgagggctaagggaagtacctgacggaatctcgaccaacactcggtac
ctgaatttgcaggagaatcagattcaggtgatcaaagtggacagttttaagcatctgcgc
cacctggagattttacagctcagcaggaaccacattcgtagcattgagattggggccttt
aatggcctggcaagcctcaataccttggagctgtttgataaccgactaactacgatcccc
aatggggcctttgagtatctctctaagctgaaagagttgtggttaaggaacaaccccatt
gaaagcatcccctcgtatgccttcaaccgggttccgtcgctaaggaggcttgatttgggg
gagctgaaacgtctatcctacatctcagaaggggcgtttgagggtctttccaacctcagg
tacctgaatctcggaatgtgcaacctgaaggaaattccaaaccttactcctctgataaag
ttggacgagttagagctttctggaaaccagctttctattatccgtccgggatcctttcaa
cggctgacccatcttcagaagctgtggatgatgcacgcccagatacagtcaattgagagg
aactcttttgacgacttacagtccttgatagagctgaatttggctcataacaaccttact
ttgctcccacatgacctttttacccctcttcaccatctggagagagttcatctgcaccac
aatccttggaactgcaattgtgatatcctttggctcagttggtggctcaaagagatggtg
cccgcgaacactagctgttgtgcacgttgccattcaccatcccttcttaaagggcgttat
atcggagagctggaccagaattattttacctgctatgctcctgttattgtggagccacct
gctgatctcaatttgacagagggcatgccggcagagcttaaatgccgagcttccacttcc
ttgacttcggttagctggatcacacctaatggaaccataatgactcacggggcttacaag
gttcgcatttcggtccttaatgacgggacgttaaacttcaccaacgttactgtgcaggac
acagggacgtacacctgtatggtaagcaactcggctggaaacaccacggcgtcggccacg
ctcaatgtttctgcaacggaaaacagcacctttagcttctttacaacggttacggtagaa
accattgaacccccctatgatgagggtaggaccacagagcaaagcgtggggccgacggcc
tctaacggctgggtaacggcctttgccactactccgcttacatcgaggagcaccaagtcc
accgagaaaacgtttacgattccagtaacggaggtcgataatggcagtctaaatggactg
gatgaggtcatgaagaccaccaagatcatcattggctgcttcgtggccattacgctgatg
gccgccgtcatgctaattattttctataagatgcgaaaacagcaccaccggcaaaaccac
catgccccaaccaggacaatcgagataataaacgtggacgatgaaatcacgggaggcccg
gccctggagagccacctgactttgcccacactggagcacgaacatctcaaccactataac
tcttataagactccttttaaccacacaaccaacacaatcaattccttacacagctccgcg
catgaacctttgttaatccgggcaaactcaaaagacaatgttcaagagacccaaatctga
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