Polypterus senegalus (gray bichir): 120523452
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Entry
120523452 CDS
T08668
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03013
Nucleocytoplasmic transport
psex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120523452 (upf3a)
03015 mRNA surveillance pathway
120523452 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120523452 (upf3a)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120523452 (upf3a)
mRNA cycle factors
P-body specific factors
120523452 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
120523452
NCBI-ProteinID:
XP_039600715
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All DBs
Position
2:complement(145436853..145468826)
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AA seq
465 aa
AA seq
DB search
MRAEKELLACGRERRAVEIQFRDTPRDQNCNAANLKHKEEKKEVFTKVIIRRLPPNLSKE
QLEEQLNPLSAYDYFEFFSADQSLYPHLFSRAYINFKNPEDIVLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKLKKKDAKAGSIDEDPEYRKFLESYCGDDEKTIANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRRELEKKRMREEEKRKRREEER
RKRKEAEKQKKLAEKEIKIKLLKKTDKDDEQDSEKLDDKGEVEPEKGKWDKTSVSINLKC
KHMDSINKEQKEKGLTESDKEQREHGRRLREKDPDRQRCRDDEHKRQRHHYEFDKFMRRK
EETKWGKGFCQDRIKKDIYTNYSYCVDISDKLGKDDRCDDLASKKERIRNKDRPAMQLYQ
PGARSRTRLGSGDKSYECSNKSPDHIFERKYDAAAGTGSQKSEDE
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgagggccgagaaagagctgctcgcctgcggcagggaaaggagggctgtagaaattcaa
ttccgagatacgccaagggatcaaaattgcaacgccgctaatctaaagcataaagaggag
aaaaaggaagtcttcactaaggtaataattcgacgtctgccaccaaacctttctaaagag
caactcgaagaacagttaaacccattgtctgcttatgattattttgaattcttctctgca
gatcagagcctttatccacatcttttctcaagagcatacatcaattttaaaaatccagaa
gacattgttctattccgagaccggtttgatggatatgtttttattgacaacaaaggtcag
gaatatcctgccgttgtagagtttgcaccttttcaaaaagtatctaagaagaagctaaaa
aagaaagatgccaaggctggaagtattgatgaagatcctgaatacagaaagttcttggaa
agttattgtggagatgatgaaaaaactatagcaaatcctgaaacgttgcttggagagatt
gaagcaaagactagagaacttattgccaaaagaacaactcctcttctagaatatatcaaa
aataagaaactggaaaagcaacgaatcagagaggaaaaaagagaagaaagacgacgcaga
gagcttgagaaaaagcgaatgagagaagaagaaaagcggaaacgcagagaggaagaaagg
cgtaaaaggaaggaggcagagaagcagaagaaactagcagaaaaagaaataaaaataaag
cttctcaaaaaaactgacaaagatgatgaacaggattcagagaagctggatgataaaggg
gaagtagaacctgaaaagggaaaatgggataaaacttcagtttctattaatttaaaatgt
aaacacatggacagcataaataaagaacaaaaagaaaaaggtctgactgaaagtgacaag
gagcaacgggagcatggacggagactgagagagaaagaccccgacaggcaaagatgtcgt
gatgatgagcataaaaggcagaggcaccattatgagtttgacaaatttatgagaagaaag
gaagaaaccaaatggggaaaggggttctgccaagacaggattaagaaagatatttacacg
aactattcatattgtgtggacataagtgataaattggggaaagatgatcgctgtgatgat
ttggcatccaaaaaggagcgaatccgcaataaggaccggccagcaatgcagttgtatcaa
ccaggagctcgcagccgaacacgattggggtccggtgataaaagttatgagtgttctaac
aaatctccagatcacatctttgagagaaagtatgatgcagctgcaggaaccggatcacag
aaaagtgaagatgagtaa
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