Polypterus senegalus (gray bichir): 120523958
Help
Entry
120523958 CDS
T08668
Symbol
nup98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120523958 (nup98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120523958 (nup98)
03036 Chromosome and associated proteins [BR:
psex03036
]
120523958 (nup98)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120523958 (nup98)
Chromosome and associated proteins [BR:
psex03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120523958 (nup98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
120523958
NCBI-ProteinID:
XP_039601644
LinkDB
All DBs
Position
2:283848388..283975186
Genome browser
AA seq
1787 aa
AA seq
DB search
MMFNKSFGTPFGGGATAFGTTSTFGQGSGFGSTGAFGTSSSFGTSNNTGGLFGNTQNKPG
GLFGSSTFSQPATSTSTGFGFGTASGSSNSLFGSTNTGGSLFSQPNNAFSQSKPGSFGTF
GTSTNTGGLFGTTSTSSNPFGGTTGSLFGSTGFGAAQTGTTIKFNPPNGNDTMVKAGVTT
SINTKHQCITAMKEYENKSLEELRLEDYQAERKGPQNPIAGGTGVLFGTPTATSSTATGL
FGASTANTGFSFGPSKTGFGTGAFGSGTGSLFGSQPSQPGTSLFNKPFGQVTTTPSTGFS
FGSTNTLGQPNTSSIGLFGNTSASQSGGLFGSSTNTSTATAFGTGTGLFGATNTSFGNPA
GQTMFGNKTTGFGTTTTSAPSFGTGTGLFGNKPSLTLGTNTNTSTFGFGSTGGSLFGNKP
ATGGLGTGLVTPFGSALGTGQTSLFGNNQPKIGSTLGSVGTFGNLGFNTSTTGLGFGTPQ
QAVALTDPNASAAQQTIIQQFFNTLTFYPYGDSPLFRNPLTDPKKKEERLKPTNPAAQLT
LTTQNRYRLSLRPATRVRPKALTSSSSSKSQLFEGLDDDDPLFSKGSLVPRKSIKRLVLK
NLNRSSLFSQMNRENDDLASPSEYPENGDRTIEEESGTQEIERDDEDSGVGKFYTNPIAK
PIPHTPLGSQSFSLQDTINELGVRNIVRNGLEVSSEDASLGDDSLQEEREEEFDCNRPPH
PAGIVLNRVGYYTIPSMDELARMTNENGECIVENFTIGRKGYGSVYFPGRINLTNLNLDD
IVHFRRKEVIVYPDDNLKPTVGEELNRAAEVTLDGVWPTDKTTRTQITSPERLLQMNFEG
RLEKSCLDQGAQFLEYRPETGSWVFQVPHFSKYGLKSADGEDDVPPPKTDAKKLKSASGT
TSGQQQSPVQQMALNGKEVQNQDLLEQLGRVAELDSDMADITQEPPLDGMMEDDDSTDMT
EKEFPADTEPLSTSHIAASLGINPHTLQVMKASLFADDDDSEYNQDQRFGKFSQETSSPR
VLSGSQAGGLIYQRTKTGTFRQPQSQEVYGSRKAPCSLATEPSWSMFGSSFLRPPPTSEM
PLRTVGARRQMGPVPLEKSVTLGKGKLLMDMALFMGRSFRVGWGPNWILTHSGEQLSATA
CCQSDSSLDVVGYGLLPRQPPVNQVSECPLKVFIEKLTIAEPEVEEEHLKLYQCPLEIEF
KNSVVITDDPCPFIQPVHGVEALHEYADWITTVIKDLDTCDGTVRCWKLVWTLCEALWGR
LCAPDIEVQSKYAEHLERRRAFSNWLSQSVKHKIEEEVALSKKENHLDAIYSYLTGNHIS
EACKLAQQCVDHRLSLLLSQAAGSQGIRELLSMQLVDWCNLQIDSHIQEERLRVYTLLSG
KPVWQSSDGFINVCSGLDWKRCVAIHLWYMLSPTASIADALCKYEEAFLGDTQKYACAPL
PPYLEDIGIEHQEPEDTGKSKKPLYDICFHLLKLYSDRHYDLQELLDPCTVTPDRLDYRL
SWHLWNVLQALKYSHLSSQQQGLLHASYAAQLESRGLWEKAVFVLLHISDAHARERAVKE
MLRLHCSLMEADESSKKERFLTEKLLIPVQWIHEAKAIRACQEGNKHKQALHLFKARHWN
QCHKLVIQHLASDAIINESHDYLLSFLEGLAPPERSVLIQDWDSSGKVFLDYIRVLQTLQ
RMEQLDSQGYELEQLHTEVTSLCGRIQLIQCFTAKDRLAQSEMAKRVANILRIVLSLQRG
GEGAPDSLHIPLHYLAPHIGRLPMPEDYALEELRNLTRSYLQELVIQ
NT seq
5364 nt
NT seq
+upstream
nt +downstream
nt
atgatgtttaacaaatcgtttggaactccttttggaggtggtgcaacagcgtttgggaca
acttctactttcggacaaggttctgggtttggctctactggtgcatttggaacatcatca
tcatttggaacaagtaacaacacgggaggactctttggaaatacacaaaacaaaccaggg
ggactctttggatcaagtacctttagccaacctgcaacttccaccagcactggatttggt
tttggaacagccagtggctcttcaaacagcctttttggaagcaccaatactgggggaagc
ttattttcacagccaaataatgccttcagccagagcaagccagggagctttggaacattt
ggaacaagcaccaacactgggggactatttggtacgacaagcaccagctctaacccattt
ggtggaactactggatccctttttggatccacaggctttggggctgcacagacaggaacc
actattaagtttaatcctcctaatggaaatgacacgatggtgaaagcaggtgtcactacc
agcattaataccaaacatcagtgcataacagccatgaaagagtatgagaataaatcattg
gaggagttgcgtttggaagattaccaggcagaaagaaagggccctcagaacccaattgca
ggaggcactggggtactgtttggaaccccgacagctacatctagtacagccacaggttta
tttggagcatctacagcaaatacaggcttctcttttggaccaagcaaaactggttttggt
actggtgccttcggatctggaaccggtagcctctttggttcacagccatcgcaaccagga
acaagcctctttaataaaccctttggtcaggttacaacaactccaagtactggcttttca
tttggcagtacaaacactttgggtcaacccaacaccagtagtatcgggttatttggaaac
acttctgcttctcagtctggtggtctttttggaagctcaaccaataccagcactgcaact
gcatttggaacaggaactggactttttggggccacaaacacttcatttggcaaccctgct
gggcagactatgtttggcaataaaacaacaggatttggaaccacaacaacaagtgcacct
tcctttggcactggtactggattgtttggaaataagccttctcttactttgggcaccaat
accaatacttccacttttgggtttggatcaactggtgggagcttgtttggtaataaacct
gctactggtggattaggcactggacttgtaacaccttttggatcagctctgggcactggc
caaacatccctatttggaaataatcaaccaaagattggctccactcttggtagtgtggga
acttttgggaatcttggattcaacacatctactactggtctggggtttggaaccccacag
caggcagttgctttgactgatccaaatgcctcagcagcacaacaaactataatacagcag
tttttcaacacgctgacattttatccgtatggggattcacctttgtttagaaacccgttg
actgatccaaagaagaaagaagagagattaaagccaacaaatcctgcagcgcagttaaca
ctgacaacacaaaatcgctatagattatcacttcgtcctgcaacacgtgtaaggcctaag
gcccttacttcctccagttcatctaaatcacagctgtttgaaggcttggatgacgatgat
cccctgttttcaaaaggatccttagtgccaagaaagagtatcaagagattggtacttaag
aacctgaatcgtagcagccttttttctcaaatgaaccgggagaatgatgatctcgcttct
ccgtcagagtaccctgaaaatggggacagaactattgaggaagagtctgggacacaggag
attgagagagatgatgaggattctggagttggcaaattttatacaaatcctattgcaaag
cctattccccatactccacttggaagtcagtctttttcactgcaagatacaataaatgaa
cttggcgtacgcaatattgttcgtaatggattagaagtaagcagtgaagatgcatcttta
ggagatgactctttgcaggaggaacgagaagaggagtttgattgtaatcgacctccacat
ccagctgggattgttctgaacagagttggttactacaccataccctctatggatgaactt
gcgaggatgaccaatgaaaatggagaatgtattgttgaaaattttacaattggccggaaa
ggctatgggtcagtctactttccaggaaggatcaatttgaccaatctaaatcttgatgac
attgttcatttccggcggaaagaagtaatcgtttacccagatgataacctaaagccgact
gtaggagaagaactaaacagggctgcagaagtgacacttgatggagtgtggccaactgat
aagacaacacgcacacagatcacaagtccagaacgcctgttgcaaatgaattttgaggga
agattggaaaaatcatgtctcgaccagggtgctcagttcttggaatacagacctgaaaca
ggttcctgggttttccaggttcctcatttctccaaatatggactaaaatcagctgatggg
gaagatgatgttccacctccaaaaacggatgccaagaagctaaaatctgcttcagggaca
acttcaggacagcagcagtcacctgttcaacagatggcacttaatggaaaagaagtacag
aaccaggatttgttggagcagctgggaagagtggcagagctggacagtgacatggcagat
attacccaagaaccacctcttgatggaatgatggaagatgatgacagtacggatatgact
gaaaaagaatttcctgcagatactgaacctttgtctacatctcatatagctgcgtcactt
ggtataaacccacatacactacaggttatgaaggcctccttgtttgcagatgacgatgat
tcagagtacaatcaggatcaaagatttggaaagttttcacaggaaactagctcccctaga
gtattaagtggttctcaagctggagggctgatttatcaacgaacaaaaactggtaccttt
cgccaacctcaatcgcaggaagtttatggttcgaggaaggctccctgttcattagctaca
gagccttcatggtccatgtttggctcctcttttctaaggccaccaccaacttctgagatg
cctctccgcacagtgggtgcacgccgtcagatgggtccagttcctcttgagaaatcagta
acccttggtaaaggcaaactgctgatggacatggcactcttcatgggacgctcttttcga
gtgggatggggccctaattggattttaactcatagcggtgaacagcttagtgcaacagca
tgctgccaaagtgatagttcccttgatgttgttggatatgggcttctacctagacaacct
ccagttaaccaggtttctgaatgcccattaaaagtcttcatagagaaattgaccatcgct
gaacctgaggtggaagaggaacacctgaagttataccaatgtccccttgaaattgaattc
aaaaatagtgttgtcatcactgatgacccctgtccttttatccagccagttcatggggtg
gaagcacttcatgaatatgcagactggatcacaactgtgattaaagacctggacacatgt
gatgggacggtgagatgctggaagcttgtctggaccttgtgtgaagctctctgggggcgt
ctttgtgctcctgatattgaggttcaaagtaaatatgctgaacatttggaacgcaggaga
gctttctccaattggttatcacaaagtgtgaagcacaaaattgaggaagaagtagcactt
tctaaaaaggagaatcatttggatgcaatctacagctacttgactggaaatcacattagt
gaggcttgtaaactggcacaacaatgtgttgatcatcgactttctttactgctgtcacaa
gcagcagggagtcagggcatcagagaattgctttctatgcagctagtggattggtgtaat
cttcagattgattctcatatacaggaggagagactaagagtatacacgttgctttctgga
aaaccggtatggcagtcttcagatggctttattaatgtgtgctctggactggattggaag
cgatgtgttgccatacatctctggtatatgttatcacctactgcttctatagctgatgcc
ctctgcaagtatgaagaagcttttctgggagacactcagaaatatgcctgtgcacctctt
cctccttatctggaggatattggaattgagcatcaggaacctgaggatacaggaaaatca
aaaaagccactttatgatatttgttttcatttgctgaaactctatagtgacaggcattat
gacctacaggagttgcttgatccctgcactgtcactcccgataggttggattaccgatta
agctggcacctttggaatgtgcttcaagccttaaaatattcacatttatccagccaacag
caggggttgttgcatgcaagttacgcagctcaactggagagcagaggactttgggaaaag
gcagtttttgttttacttcacattagtgatgcacatgcgcgagaaagggctgttaaagag
atgctcagactacattgttctctgatggaagcagatgaatcctccaagaaggaacgtttt
cttactgaaaagttactcattccagtgcagtggatccatgaggccaaagctattcgtgct
tgtcaagaaggcaacaaacataaacaagcacttcacttatttaaggcacgtcactggaac
cagtgtcacaagctagtcatccagcatttggcttcagatgcaatcatcaatgaaagccat
gactaccttttgagtttcttggaaggtcttgcaccccctgaaagaagtgtcctcatccaa
gactgggattcctcaggaaaagtttttcttgattatataagagtattacagacactacaa
agaatggagcagctggacagtcaaggttatgagcttgaacaacttcatactgaagtgaca
tccctttgtggaaggatacagcttattcagtgctttacagcaaaagatagacttgcacaa
tcagagatggcaaagcgagtggcgaatattttgcgtattgttttgagtcttcagcgagga
ggtgagggtgctccagactctctgcacataccccttcactaccttgcaccacatatcggc
cgcttaccgatgcctgaggattatgcattggaagaacttcgcaacctcacaagatcatac
ctgcaagagcttgtcatccagtaa
DBGET
integrated database retrieval system
