Polypterus senegalus (gray bichir): 120524066
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Entry
120524066 CDS
T08668
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04382
Cornified envelope formation
psex04510
Focal adhesion
psex04512
ECM-receptor interaction
psex04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120524066 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120524066 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120524066 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120524066 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
psex04147
]
120524066 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
psex00536
]
120524066 (col4a2)
Exosome [BR:
psex04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120524066 (col4a2)
Glycosaminoglycan binding proteins [BR:
psex00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120524066 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120524066
NCBI-ProteinID:
XP_039601848
LinkDB
All DBs
Position
2:complement(311355596..311636412)
Genome browser
AA seq
1690 aa
AA seq
DB search
MNLHAPFSVRLLLLFVLFAVPVESGGKSNVGPCAGRDCSGPCKCFPEKGARGQPGLLGPQ
GPTGPPGFPGHSGHPGPKGEKGERGRSGPSGPKGSVGAEGVPGFTGADGIPGHPGQAGPR
GKPGADGCNGTIGDSGHSGVPGIVGFPGLTGIMGPKGQKGEPWHVTVIMEQMRGDPGDPG
FQGFQGPNGAPGPIGLQGASGPLGRPGPPGPPGPKGSQETALKGEKGELGDAGPPGEPGR
YTFEAPKPSIKGPRGDIGGKGPKGNIGEQGLPGFGAEKGEDGVVGFPGGRGAPGIDGLPG
IHGEKGMTGTDGTPGQHGFKGLKGARGDTGPKGTTTFIRVVPSQIKGEAGDVGVEGERGT
KGNRGDSGEAGPAGYPGIPASTAGRRGKPGLPGPPGKRGDTGDTGAPGSGVPIPGLPGND
GRHGNPGLPGKKGQTSKGTGSPGERGAPGRTGERGFKGDHGECACEQQTPGEPGETGRPG
PEGLPGRTGEQGQRGDPGDPGPGGERGTQGPQGDTGSPGLKGPKGEAIVVNEKGSKGDTG
DAGLPGFVGPRGLPGRDGFPGAKGFKGLSGDGVKGPQGDKGYQGPPGQSGTVGETGLPGL
TYPSVIGPRGLPGDVGFDGPPGPSGAQGNKGDCGCCTAQGHQEGVGRQENETAPTGEPCS
TKGEPGPPGPPGLPGLSGRKGVFGFPGLPGPKGITGIKGEFGSPGSGGQPGPPGFIGPRG
DEGVPGETGQPGFRGKPGNPGTSGSLGQKGAQGDILDAVPGPKGESGPHGSLGQKGHPGE
QGPPGIPGRQGMPGLTGPKGVKGSLGFKGIMGLPGPKGVSRQPGNPGESGIRGVPGNTGI
SGFPGERGDPGQQGPPGTIGIKGYSGIHGDMGPQGQQGLPGNRGLPGPEGYPGIPGQKGT
KGFFGMPGFDGVVGQKGSRGSPGLHGEIGSIGFTGTKGVLGQIGEKGDRGKAGDPGPVNM
PPVGELKMKGEKGSQGEMGHRGFTGPRGDKGMPGPPGSQGYHGMPGEPGEEKGVVGPAGT
IGLPGIKGLPGQHGPTGIEGFPGMPGYKGEKGRTGVHGVTGETGIKGLKGETGPRLDMPG
PTGSRGEQGLNGQPGSHGQPGVPGDIGDRGFQGIDGMKGQKGIEGYRGEEGSIGLRGYEG
SQGQTGPHGFSGQSGSPGKPGLKGQPGFPGTKGLPGLDGLVGQKGLPGSPGVDGLGFPGE
PGFAGQRGEPGDLNEQTGFPGTRGEKGKRGDPGETGLEGDRGFQGPPGPPGISEKVGLPG
DVGPSGIQGEKGLQGFQGFPGRPAENGEKGQQGDPGSSGFRGPDGFKGDYGYQGPQGIEG
IAGQKGEKGAQGLMGLPGRSGTVGDHGPTGAKGNAGPPGFAGDPGSPGLPPIPPQVKGEQ
GDRGKIGFPGPNGVTGEQGHVGPSGNPGIPGANGKPGAQGASGRPGIPGIRGDVGHVGQQ
GLQGFEGHSGRQGTPGHPGMPGRSVSVGYLLVKHSQSDQIPMCPVGMAKLWDGYSLLYFE
GQEKAHNQDLGLAGSCLPKFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPIPMMPVEED
QIKPYISRCSVCEAPSLAIAVHSQDITIPQCPVGWRSLWIGYSFLMHTAAGDEGGGQSLV
SPGSCLEDFRATPFIECNGAKGTCHFFANKHSFWLMTIDTSFQTTFTPETLKAGQLLSRI
SRCQVCMKNL
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgaatctccatgcaccattcagtgtgagactgctgttgctgtttgttctttttgcagtt
cctgttgaatcgggtggaaagtctaatgtggggccatgtgctgggagagactgcagtggt
ccatgcaagtgttttccagagaaaggggcccgtggtcagcctggtcttcttggcccacaa
ggaccgactgggcctccaggcttccctggccattctggtcatcctggccctaaaggagag
aaaggtgaacggggaaggtcaggaccatctggccctaaaggcagtgtgggagcagaaggc
gttccaggctttactggagctgacggcattcctggtcatccaggtcaagctggaccaaga
ggtaaaccaggtgctgatggctgcaatggaacaattggagactctggccactctggagtg
cccgggattgttggatttcctggattgacgggcatcatgggccctaaaggacaaaagggt
gagccttggcatgtaacagtaattatggagcaaatgaggggagatccaggtgaccctggc
tttcagggattccagggtcctaatggagctccaggtcctataggtctgcagggcgcttca
ggtcctctaggacgaccaggaccccctggaccacctggaccaaagggttcccaggaaaca
gcactgaaaggagaaaaaggagaactaggtgatgctgggccaccaggagaacccgggaga
tacacttttgaagcacccaaaccttctattaaagggccgagaggtgacataggaggtaag
ggacccaaaggaaatataggagagcaaggtctacctggttttggggcagaaaaaggagaa
gacggggtagtaggttttccaggtggaaggggtgcaccaggcatagatggtttgccaggg
attcatggagaaaagggaatgactggaactgatggtaccccaggacaacatggatttaaa
ggactgaagggtgccagaggtgacacaggacccaaaggaacaacaacttttattcgagtt
gtcccttcccagattaaaggtgaagcaggagatgttggcgttgaaggagaaagaggaacc
aagggtaacagaggtgactcaggcgaggctggtccagctggctatcctggtatacctgca
agcacagctgggagacgtggtaaaccaggtcttcctggtccaccaggaaagcgtggtgat
actggtgacactggagctcccggatctggtgttcctattcctgggcttcctggaaatgat
ggccgtcacggtaaccctggtcttccaggaaaaaaaggacaaacttcgaaaggaactgga
tctccaggagaacgaggtgcacctggccgcactggagagagaggctttaaaggagaccac
ggtgaatgtgcatgtgaacagcagacgccaggagaacctggtgagactggacggcctggc
ccagagggacttccaggcaggactggagaacagggccagcgtggggatcctggtgaccca
ggaccaggaggagaaagagggactcagggtcctcaaggagacactggctcacctgggcta
aaaggcccgaaaggagaagccattgtagtcaatgagaaaggtagcaaaggagatacagga
gatgcaggtttaccaggatttgtaggtcccagagggctaccaggacgtgatggttttcct
ggtgcaaaaggattcaaaggtctttctggtgatggagttaaaggaccccaaggagacaaa
ggataccaaggtccaccaggtcaatcaggaacagtaggtgaaaccggtctacctggcctt
acctacccctctgtgattggtccccgaggactaccaggtgatgttggctttgatgggccc
cctggaccttcaggtgcccaagggaataaaggtgactgcggatgttgcactgctcagggt
catcaggaaggtgttgggagacaggagaatgagacggcaccaacaggtgagccatgcagc
accaagggagagcctggacccccaggacctccagggttgccaggcttgagtggaaggaaa
ggagtatttggatttccaggattacctggaccaaaaggcatcactggaatcaaaggtgaa
tttggcagtccaggttcaggagggcaaccagggcctccaggatttattgggcctcgtgga
gatgaaggtgttcccggtgaaactggacagcctggcttcagaggtaaaccaggaaacccg
ggaacctctggctctctggggcagaaaggagcccaaggtgatatacttgatgctgtacct
gggcccaaaggagaatctggacctcatggatcattaggacagaaaggacatccaggtgaa
caaggaccaccaggaatcccaggaagacaagggatgccaggattaacaggccctaagggt
gtgaaaggttctctaggtttcaaagggattatgggtttaccaggaccaaagggagtgagt
aggcaacctggaaatccaggagaatcaggaattcgtggagtacctggtaacacaggaatc
tcaggcttcccgggagaacgaggggatccaggacaacaaggcccacctggaaccataggt
ataaaaggatattctggcattcatggagatatgggacctcaaggacaacaaggtctacct
ggcaatagaggcttacctggaccagagggatatcctggtatacctggacagaaaggaaca
aagggcttttttggcatgccaggatttgatggtgttgttgggcagaaaggatctcggggc
tctccaggcttgcatggggagattggaagtattggattcactggcactaaaggagtgctt
ggtcagattggagaaaaaggtgatcgaggaaaagctggggatcctggacctgtaaatatg
ccaccagttggtgaattaaaaatgaagggggagaagggttcacaaggagaaatgggtcat
agaggctttactggaccaagaggtgacaaaggaatgcctgggcccccaggttcacaaggc
tatcatggaatgcctggagaacctggtgaggaaaagggtgtggtgggtccagcaggaaca
attggccttccaggtataaaagggttgcctggccaacatggacctactggcattgaaggg
tttcccggcatgcctggatataaaggtgaaaaaggaaggactggagtgcatggcgttaca
ggtgaaactggcatcaagggactgaaaggggagactggaccaaggctagatatgccaggg
ccaacaggcagtcgaggagaacagggtctgaatggacagccagggagccatggtcaaccc
ggtgttccaggcgatattggggacagaggtttccaaggaattgatggaatgaaaggtcag
aagggcattgaaggatacagaggagaagagggttctattggtctacgtggatatgaagga
tctcagggtcagacaggtccgcatggcttttcaggccagtctggcagtccagggaagcca
ggacttaaaggacaaccaggtttccctggcacaaaaggtttgcctggcctcgatggactt
gtggggcaaaaaggcctcccaggatcacccggtgtggatggcctgggttttccaggagag
cctggcttcgcagggcagagaggagaaccaggagatctcaatgagcagactggatttcca
ggaactcgtggggagaagggaaaaagaggagatccaggtgaaacaggcctggaaggtgac
agaggcttccaaggtccacctggacccccaggcatctctgagaaagtggggctgcctggt
gatgtgggcccatcaggaatacagggtgaaaaaggtcttcaaggcttccaaggatttcct
ggcagacctgcagagaatggtgaaaaaggacagcagggggatcctggatcctctggattt
agaggaccagatggatttaaaggggattatggctaccagggtccacaaggaattgaaggg
attgcgggacagaaaggtgaaaaaggtgctcaaggtctgatgggacttcctggcagaagt
ggaacagtgggagaccatggccctacaggagcaaagggcaatgcaggacctcctggtttt
gcgggtgacccaggatctcctggactgccaccaattcctccacaagtgaaaggggaacag
ggggaccgtggaaagataggatttcctggacctaatggagtcacaggagaacagggacat
gtaggtccctcagggaatccaggaatcccaggtgccaatggaaagcctggtgctcaggga
gcaagcggtaggccaggcataccaggaatcagaggtgatgttggacatgttggtcagcag
ggtctccagggcttcgagggacattcaggccgtcaaggtactccaggacatcctggaatg
ccaggccgcagcgtcagtgtgggatacctactggtgaagcacagtcagtctgaccagata
cccatgtgtccagtgggaatggccaaactttgggatggatacagcctgctttactttgag
gggcaagaaaaagctcacaatcaagacctgggattggcaggatcatgtctcccaaagttc
agcaccatgccgttcctgtactgcaatcctggagacgtctgctactatgccagcagaaat
gacaaatcctattggctgtccaccaccgcccccatccccatgatgccagtggaggaagac
cagattaaaccgtacatcagtcggtgctctgtgtgtgaggccccttcacttgccatcgct
gtccacagccaggacatcaccatccctcagtgtcctgtaggctggcgcagtttgtggatt
ggctattccttcctaatgcacacggcagcaggtgatgagggtggtggccagtctctggta
tcacctggcagttgcctcgaggatttccgcgccactccctttatcgagtgcaatggagcc
aaagggacctgccactttttcgccaacaagcatagcttctggctgatgacgatagacacc
tccttccaaacaactttcaccccggagactctgaaagccggtcagcttctgtctcggata
agccgctgtcaagtgtgcatgaagaacctctaa
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integrated database retrieval system
