Polypterus senegalus (gray bichir): 120524066
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Entry
120524066 CDS
T08668
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04510
Focal adhesion
psex04512
ECM-receptor interaction
psex04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120524066 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120524066 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120524066 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
psex04147
]
120524066 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
psex00536
]
120524066 (col4a2)
Exosome [BR:
psex04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120524066 (col4a2)
Glycosaminoglycan binding proteins [BR:
psex00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120524066 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120524066
NCBI-ProteinID:
XP_039601848
LinkDB
All DBs
Position
2:complement(311355596..311636412)
Genome browser
AA seq
1690 aa
AA seq
DB search
MNLHAPFSVRLLLLFVLFAVPVESGGKSNVGPCAGRDCSGPCKCFPEKGARGQPGLLGPQ
GPTGPPGFPGHSGHPGPKGEKGERGRSGPSGPKGSVGAEGVPGFTGADGIPGHPGQAGPR
GKPGADGCNGTIGDSGHSGVPGIVGFPGLTGIMGPKGQKGEPWHVTVIMEQMRGDPGDPG
FQGFQGPNGAPGPIGLQGASGPLGRPGPPGPPGPKGSQETALKGEKGELGDAGPPGEPGR
YTFEAPKPSIKGPRGDIGGKGPKGNIGEQGLPGFGAEKGEDGVVGFPGGRGAPGIDGLPG
IHGEKGMTGTDGTPGQHGFKGLKGARGDTGPKGTTTFIRVVPSQIKGEAGDVGVEGERGT
KGNRGDSGEAGPAGYPGIPASTAGRRGKPGLPGPPGKRGDTGDTGAPGSGVPIPGLPGND
GRHGNPGLPGKKGQTSKGTGSPGERGAPGRTGERGFKGDHGECACEQQTPGEPGETGRPG
PEGLPGRTGEQGQRGDPGDPGPGGERGTQGPQGDTGSPGLKGPKGEAIVVNEKGSKGDTG
DAGLPGFVGPRGLPGRDGFPGAKGFKGLSGDGVKGPQGDKGYQGPPGQSGTVGETGLPGL
TYPSVIGPRGLPGDVGFDGPPGPSGAQGNKGDCGCCTAQGHQEGVGRQENETAPTGEPCS
TKGEPGPPGPPGLPGLSGRKGVFGFPGLPGPKGITGIKGEFGSPGSGGQPGPPGFIGPRG
DEGVPGETGQPGFRGKPGNPGTSGSLGQKGAQGDILDAVPGPKGESGPHGSLGQKGHPGE
QGPPGIPGRQGMPGLTGPKGVKGSLGFKGIMGLPGPKGVSRQPGNPGESGIRGVPGNTGI
SGFPGERGDPGQQGPPGTIGIKGYSGIHGDMGPQGQQGLPGNRGLPGPEGYPGIPGQKGT
KGFFGMPGFDGVVGQKGSRGSPGLHGEIGSIGFTGTKGVLGQIGEKGDRGKAGDPGPVNM
PPVGELKMKGEKGSQGEMGHRGFTGPRGDKGMPGPPGSQGYHGMPGEPGEEKGVVGPAGT
IGLPGIKGLPGQHGPTGIEGFPGMPGYKGEKGRTGVHGVTGETGIKGLKGETGPRLDMPG
PTGSRGEQGLNGQPGSHGQPGVPGDIGDRGFQGIDGMKGQKGIEGYRGEEGSIGLRGYEG
SQGQTGPHGFSGQSGSPGKPGLKGQPGFPGTKGLPGLDGLVGQKGLPGSPGVDGLGFPGE
PGFAGQRGEPGDLNEQTGFPGTRGEKGKRGDPGETGLEGDRGFQGPPGPPGISEKVGLPG
DVGPSGIQGEKGLQGFQGFPGRPAENGEKGQQGDPGSSGFRGPDGFKGDYGYQGPQGIEG
IAGQKGEKGAQGLMGLPGRSGTVGDHGPTGAKGNAGPPGFAGDPGSPGLPPIPPQVKGEQ
GDRGKIGFPGPNGVTGEQGHVGPSGNPGIPGANGKPGAQGASGRPGIPGIRGDVGHVGQQ
GLQGFEGHSGRQGTPGHPGMPGRSVSVGYLLVKHSQSDQIPMCPVGMAKLWDGYSLLYFE
GQEKAHNQDLGLAGSCLPKFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPIPMMPVEED
QIKPYISRCSVCEAPSLAIAVHSQDITIPQCPVGWRSLWIGYSFLMHTAAGDEGGGQSLV
SPGSCLEDFRATPFIECNGAKGTCHFFANKHSFWLMTIDTSFQTTFTPETLKAGQLLSRI
SRCQVCMKNL
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgaatctccatgcaccattcagtgtgagactgctgttgctgtttgttctttttgcagtt
cctgttgaatcgggtggaaagtctaatgtggggccatgtgctgggagagactgcagtggt
ccatgcaagtgttttccagagaaaggggcccgtggtcagcctggtcttcttggcccacaa
ggaccgactgggcctccaggcttccctggccattctggtcatcctggccctaaaggagag
aaaggtgaacggggaaggtcaggaccatctggccctaaaggcagtgtgggagcagaaggc
gttccaggctttactggagctgacggcattcctggtcatccaggtcaagctggaccaaga
ggtaaaccaggtgctgatggctgcaatggaacaattggagactctggccactctggagtg
cccgggattgttggatttcctggattgacgggcatcatgggccctaaaggacaaaagggt
gagccttggcatgtaacagtaattatggagcaaatgaggggagatccaggtgaccctggc
tttcagggattccagggtcctaatggagctccaggtcctataggtctgcagggcgcttca
ggtcctctaggacgaccaggaccccctggaccacctggaccaaagggttcccaggaaaca
gcactgaaaggagaaaaaggagaactaggtgatgctgggccaccaggagaacccgggaga
tacacttttgaagcacccaaaccttctattaaagggccgagaggtgacataggaggtaag
ggacccaaaggaaatataggagagcaaggtctacctggttttggggcagaaaaaggagaa
gacggggtagtaggttttccaggtggaaggggtgcaccaggcatagatggtttgccaggg
attcatggagaaaagggaatgactggaactgatggtaccccaggacaacatggatttaaa
ggactgaagggtgccagaggtgacacaggacccaaaggaacaacaacttttattcgagtt
gtcccttcccagattaaaggtgaagcaggagatgttggcgttgaaggagaaagaggaacc
aagggtaacagaggtgactcaggcgaggctggtccagctggctatcctggtatacctgca
agcacagctgggagacgtggtaaaccaggtcttcctggtccaccaggaaagcgtggtgat
actggtgacactggagctcccggatctggtgttcctattcctgggcttcctggaaatgat
ggccgtcacggtaaccctggtcttccaggaaaaaaaggacaaacttcgaaaggaactgga
tctccaggagaacgaggtgcacctggccgcactggagagagaggctttaaaggagaccac
ggtgaatgtgcatgtgaacagcagacgccaggagaacctggtgagactggacggcctggc
ccagagggacttccaggcaggactggagaacagggccagcgtggggatcctggtgaccca
ggaccaggaggagaaagagggactcagggtcctcaaggagacactggctcacctgggcta
aaaggcccgaaaggagaagccattgtagtcaatgagaaaggtagcaaaggagatacagga
gatgcaggtttaccaggatttgtaggtcccagagggctaccaggacgtgatggttttcct
ggtgcaaaaggattcaaaggtctttctggtgatggagttaaaggaccccaaggagacaaa
ggataccaaggtccaccaggtcaatcaggaacagtaggtgaaaccggtctacctggcctt
acctacccctctgtgattggtccccgaggactaccaggtgatgttggctttgatgggccc
cctggaccttcaggtgcccaagggaataaaggtgactgcggatgttgcactgctcagggt
catcaggaaggtgttgggagacaggagaatgagacggcaccaacaggtgagccatgcagc
accaagggagagcctggacccccaggacctccagggttgccaggcttgagtggaaggaaa
ggagtatttggatttccaggattacctggaccaaaaggcatcactggaatcaaaggtgaa
tttggcagtccaggttcaggagggcaaccagggcctccaggatttattgggcctcgtgga
gatgaaggtgttcccggtgaaactggacagcctggcttcagaggtaaaccaggaaacccg
ggaacctctggctctctggggcagaaaggagcccaaggtgatatacttgatgctgtacct
gggcccaaaggagaatctggacctcatggatcattaggacagaaaggacatccaggtgaa
caaggaccaccaggaatcccaggaagacaagggatgccaggattaacaggccctaagggt
gtgaaaggttctctaggtttcaaagggattatgggtttaccaggaccaaagggagtgagt
aggcaacctggaaatccaggagaatcaggaattcgtggagtacctggtaacacaggaatc
tcaggcttcccgggagaacgaggggatccaggacaacaaggcccacctggaaccataggt
ataaaaggatattctggcattcatggagatatgggacctcaaggacaacaaggtctacct
ggcaatagaggcttacctggaccagagggatatcctggtatacctggacagaaaggaaca
aagggcttttttggcatgccaggatttgatggtgttgttgggcagaaaggatctcggggc
tctccaggcttgcatggggagattggaagtattggattcactggcactaaaggagtgctt
ggtcagattggagaaaaaggtgatcgaggaaaagctggggatcctggacctgtaaatatg
ccaccagttggtgaattaaaaatgaagggggagaagggttcacaaggagaaatgggtcat
agaggctttactggaccaagaggtgacaaaggaatgcctgggcccccaggttcacaaggc
tatcatggaatgcctggagaacctggtgaggaaaagggtgtggtgggtccagcaggaaca
attggccttccaggtataaaagggttgcctggccaacatggacctactggcattgaaggg
tttcccggcatgcctggatataaaggtgaaaaaggaaggactggagtgcatggcgttaca
ggtgaaactggcatcaagggactgaaaggggagactggaccaaggctagatatgccaggg
ccaacaggcagtcgaggagaacagggtctgaatggacagccagggagccatggtcaaccc
ggtgttccaggcgatattggggacagaggtttccaaggaattgatggaatgaaaggtcag
aagggcattgaaggatacagaggagaagagggttctattggtctacgtggatatgaagga
tctcagggtcagacaggtccgcatggcttttcaggccagtctggcagtccagggaagcca
ggacttaaaggacaaccaggtttccctggcacaaaaggtttgcctggcctcgatggactt
gtggggcaaaaaggcctcccaggatcacccggtgtggatggcctgggttttccaggagag
cctggcttcgcagggcagagaggagaaccaggagatctcaatgagcagactggatttcca
ggaactcgtggggagaagggaaaaagaggagatccaggtgaaacaggcctggaaggtgac
agaggcttccaaggtccacctggacccccaggcatctctgagaaagtggggctgcctggt
gatgtgggcccatcaggaatacagggtgaaaaaggtcttcaaggcttccaaggatttcct
ggcagacctgcagagaatggtgaaaaaggacagcagggggatcctggatcctctggattt
agaggaccagatggatttaaaggggattatggctaccagggtccacaaggaattgaaggg
attgcgggacagaaaggtgaaaaaggtgctcaaggtctgatgggacttcctggcagaagt
ggaacagtgggagaccatggccctacaggagcaaagggcaatgcaggacctcctggtttt
gcgggtgacccaggatctcctggactgccaccaattcctccacaagtgaaaggggaacag
ggggaccgtggaaagataggatttcctggacctaatggagtcacaggagaacagggacat
gtaggtccctcagggaatccaggaatcccaggtgccaatggaaagcctggtgctcaggga
gcaagcggtaggccaggcataccaggaatcagaggtgatgttggacatgttggtcagcag
ggtctccagggcttcgagggacattcaggccgtcaaggtactccaggacatcctggaatg
ccaggccgcagcgtcagtgtgggatacctactggtgaagcacagtcagtctgaccagata
cccatgtgtccagtgggaatggccaaactttgggatggatacagcctgctttactttgag
gggcaagaaaaagctcacaatcaagacctgggattggcaggatcatgtctcccaaagttc
agcaccatgccgttcctgtactgcaatcctggagacgtctgctactatgccagcagaaat
gacaaatcctattggctgtccaccaccgcccccatccccatgatgccagtggaggaagac
cagattaaaccgtacatcagtcggtgctctgtgtgtgaggccccttcacttgccatcgct
gtccacagccaggacatcaccatccctcagtgtcctgtaggctggcgcagtttgtggatt
ggctattccttcctaatgcacacggcagcaggtgatgagggtggtggccagtctctggta
tcacctggcagttgcctcgaggatttccgcgccactccctttatcgagtgcaatggagcc
aaagggacctgccactttttcgccaacaagcatagcttctggctgatgacgatagacacc
tccttccaaacaactttcaccccggagactctgaaagccggtcagcttctgtctcggata
agccgctgtcaagtgtgcatgaagaacctctaa
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integrated database retrieval system
